Evidence map›Paper›PMID 28975602›Full record

ArticleActa neurologica Scandinavica2018

APOL1, CDKN2A/CDKN2B, and HDAC9 polymorphisms and small vessel ischemic stroke.

R Akinyemi, H K Tiwari, D K Arnett, B Ovbiagele, M R Irvin, K Wahab, F Sarfo, V Srinivasasainagendra, A Adeoye, R T Perry and 22 more

Open access · greenAbstract read
In one paragraph

Article in Acta neurologica Scandinavica, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Effects ofBioscience reports · 2019
    Pooled it
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  15. Observational
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  18. Article
  19. Knowledge, attitudes and practices of West Africans on genetic studies of stroke: Evidence from the SIREN Study.International journal of stroke : official journal of the International Stroke Society · 2019
    Article
  20. New approaches to genetic predisposition for hemorrhagic stroke in sickle cell disease.Journal of clinical hypertension (Greenwich, Conn.) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 16 institutions in 3 countries.

R AkinyemiCenter for Genomic and Precision Medicine, University of Ibadan, Ibadan, Nigeria.ORCID http://orcid.org/0000-0001-5286-428X
H K TiwariUniversity of Alabama at Birmingham, Birmingham, AL, USA.
D K ArnettUniversity of Kentucky, Lexington, KY, USA.
B OvbiageleMedical University of South Carolina, South Carolina, SC, USA.
M R IrvinUniversity of Alabama at Birmingham, Birmingham, AL, USA.
K WahabUniversity of Ilorin Teaching Hospital, Ilorin, Nigeria.
F SarfoKwame Nkrumah University of Science and Technology, Kumasi, Ghana.
V SrinivasasainagendraUniversity of Alabama at Birmingham, Birmingham, AL, USA.
A AdeoyeCenter for Genomic and Precision Medicine, University of Ibadan, Ibadan, Nigeria.
R T PerryUniversity of Alabama at Birmingham, Birmingham, AL, USA.
A AkpaluUniversity of Ghana Medical School, Accra, Ghana.
C JenkinsMedical University of South Carolina, South Carolina, SC, USA.
O ArulogunCenter for Genomic and Precision Medicine, University of Ibadan, Ibadan, Nigeria.
M GebregziabherMedical University of South Carolina, South Carolina, SC, USA.
L OwolabiAminu Kano University Teaching Hospital, Kano, Nigeria.
R ObiakoAhmadu Bello University, Zaria, Nigeria.
E SanyaUniversity of Ilorin Teaching Hospital, Ilorin, Nigeria.
M KomolafeObafemi Awolowo University, Ile-Ife, Nigeria.
M FawaleObafemi Awolowo University, Ile-Ife, Nigeria.
P AdebayoLadoke Akintola University of Technology, Ogbomosho, Nigeria.
G OsaigbovoJos University Teaching Hospital, Jos, Nigeria.
T SunmonuFederal Medical Centre, Owo, Nigeria.
P OlowoyoFederal University Teaching Hospital, Ido-Ekiti, Nigeria.
I ChukwuonyeFederal Medical Centre, Umuahia, Nigeria.
Y ObiaboDelta State University Teaching Hospital, Oghara, Nigeria.
A OnojaDepartment of Epidemiology and Medical Statistics, University of Ibadan, Ibadan, Nigeria.
J AkinyemiDepartment of Epidemiology and Medical Statistics, University of Ibadan, Ibadan, Nigeria.
G OgboleDepartment of Radiology, University of Ibadan, Ibadan, Nigeria.
S MelikamCenter for Genomic and Precision Medicine, University of Ibadan, Ibadan, Nigeria.
R SaulsonMedical University of South Carolina, South Carolina, SC, USA.
M OwolabiCenter for Genomic and Precision Medicine, University of Ibadan, Ibadan, Nigeria.
SIREN Investigators
University of Ibadan · NGMedical University of South Carolina · USUniversity of Alabama at Birmingham · USObafemi Awolowo University · NGUniversity of Ilorin Teaching Hospital · NGAhmadu Bello University · NGAminu Kano Teaching Hospital · NGDelta State University · NGEkiti State University · NGFederal Medical Centre · NGFederal Medical Centre · NGJos University Teaching Hospital · NGKwame Nkrumah University of Science and Technology · GHLadoke Akintola University of Technology · NGUniversity of Ghana · GHUniversity of Kentucky · US

Funding

University of Alabama at Birmingham's Diabetes Research CenterP30DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Kirk Michael Habegger · 2013 to 2026
$19.5M
Stroke Investigative Research & Educational Network (SIREN)U54HG007479 · NHGRI · COLLEGE OF MEDICINE, UNIVERSITY OF IBADAN · PI OVBIAGELE, BRUCE, OWOLABI, MAYOWA OJO · 2013 to 2017
$4.2M
NHGRI NIH HHS U54 HG007479NIDDK NIH HHS P30 DK079626
6 · The paper itself

Abstract

objectiveWorldwide, the highest frequencies of APOL1-associated kidney variants are found in indigenous West Africans among whom small vessel disease (SVD) ischemic stroke is the most common stroke phenotype. The objective of this study was to investigate the association and effect sizes of 23 selected SNPs in 14 genes of relevance, including the APOL1 G1 variants, with the occurrence of SVD ischemic stroke among indigenous West African participants in the Stroke Investigative Research and Education Network (SIREN) Study. MATERIALS AND

methodsCases were consecutively recruited consenting adults (aged 18 years or older) with neuroimaging-confirmed first clinical stroke. Stroke-free controls were ascertained using a locally validated version of the Questionnaire for Verifying Stroke-Free Status (QVSFS). Logistic regression models adjusting for known vascular risk factors were fitted to assess the associations of the 23 SNPs in rigorously phenotyped cases (N = 154) of SVD ischemic stroke and stroke-free (N = 483) controls.

resultsApolipoprotein L1 (APOL1) rs73885319 (OR = 1.52; CI: 1.09-2.13, P-value = .013), rs2383207 in CDKN2A/CDKN2B (OR = 3.08; CI: 1.15-8.26, P -value = .026) and rs2107595 (OR = 1.70; CI: 1.12-2.60, P-value = .014) and rs28688791 (OR = 1.52; CI: 1.03-2.26, P-value = .036) in HDAC9 gene were associated with SVD stroke at 0.05 significance level. Polymorphisms in other genes did not show significant associations.

conclusionThis is the first report of a specific association of APOL1 with a stroke subtype. Further research is needed to confirm these initial findings and deepen understanding of the genetics of stroke in people of African ancestry with possible implications for other ancestries as all humans originated from Africa.

Indexed as

AdultAgedApolipoprotein L1Black PeopleBrain IschemiaCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Cyclin-Dependent Kinase Inhibitor p18FemaleGenetic Predisposition to DiseaseGenotypeHistone DeacetylasesHumansMaleMiddle AgedPolymorphism, Single NucleotideAPOL1 protein, humanApolipoprotein L1CDKN2A protein, humanCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Cyclin-Dependent Kinase Inhibitor p18HDAC9 protein, humanHistone DeacetylasesRepressor ProteinsAfrican AncestryAPOL1candidate genesCDKN2A/CDKN2BHDAC9small vessel diseasestrokeWest Africa

Identifiers

PMID28975602
PMCPMC5716854
OpenAlexW2763442423

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.