Evidence map›Paper›PMID 28975488›Full record

ArticleJournal of assisted reproduction and genetics2018

Association of TUSC1 and DPF3 gene polymorphisms with male infertility.

Youichi Sato, Chise Hasegawa, Atsushi Tajima, Shiari Nozawa, Miki Yoshiike, Eitetsue Koh, Jiro Kanaya, Mikio Namiki, Kiyomi Matsumiya, Akira Tsujimura and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Association of UHRF1 gene polymorphisms with oligospermia in Chinese males.Journal of assisted reproduction and genetics · 2019
    Article
  8. Article
  9. Chloride Channel Accessory 4 (CLCA4) Gene Polymorphisms and Non-Obstructive Azoospermia: A Case-Control Study.Medical science monitor : international medical journal of experimental and clinical research · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 1 country.

Youichi SatoDepartment of Pharmaceutical Information Science, Graduate School of Biomedical Sciences, Tokushima University, Tokushima, 770-8505, Japan. youichi.sato@tokushima-u.ac.jp.ORCID http://orcid.org/0000-0003-2224-552X
Chise HasegawaDepartment of Pharmaceutical Information Science, Graduate School of Biomedical Sciences, Tokushima University, Tokushima, 770-8505, Japan.
Atsushi TajimaDepartment of Bioinformatics and Genomics, Graduate School of Advanced Preventive Medical Sciences, Kanazawa University, Kanazawa, 920-8640, Japan.
Shiari NozawaDepartment of Urology, St. Marianna University School of Medicine, Kawasaki, 216-8511, Japan.
Miki YoshiikeDepartment of Urology, St. Marianna University School of Medicine, Kawasaki, 216-8511, Japan.
Eitetsue KohDepartment of Urology, Kanazawa University Graduate School of Medical Sciences, Kanazawa, 920-8641, Japan.
Jiro KanayaDepartment of Urology, Kanazawa University Graduate School of Medical Sciences, Kanazawa, 920-8641, Japan.
Mikio NamikiDepartment of Urology, Kanazawa University Graduate School of Medical Sciences, Kanazawa, 920-8641, Japan.
Kiyomi MatsumiyaDepartment of Urology, Suita Tokushukai Hospital, Osaka, 565-0814, Japan.
Akira TsujimuraDepartment of Urology, Juntendo University Urayasu Hospital, Urayasu, 279-0021, Japan.
Kiyoshi KomatsuDepartment of Urology, Harasanshinkai Hospital, Fukuoka, 812-0033, Japan.
Naoki ItohDepartment of Urology, NTT East Sapporo Hospital, Sapporo, 060-0061, Japan.
Jiro EguchiDepartment of Urology, Sasebo Kyosai Hospital, Sasebo, 857-8575, Japan.
Aiko YamauchiDepartment of Pharmaceutical Information Science, Graduate School of Biomedical Sciences, Tokushima University, Tokushima, 770-8505, Japan.
Teruaki IwamotoDepartment of Urology, St. Marianna University School of Medicine, Kawasaki, 216-8511, Japan.
Kanazawa University · JPSt. Marianna University School of Medicine · JPTokushima University · JPHarasanshin Hospital · JPJuntendo University Urayasu Hospital · JPSasebo City General Hospital · JPSuita Tokushukai Hospital · JP

Funding

European Union BMH4-CT96-0314Grant-in-Aids for Scientific Research (C) 26462461Ministry of Health, Labour and Welfare (JP) 1013201
6 · The paper itself

Abstract

purposeRecently, genome-wide association studies of a Hutterite population in the USA revealed that five single nucleotide polymorphisms (SNPs) with a significant association with sperm quality and/or function in ethnically diverse men from Chicago were significantly correlated with family size. Of these, three SNPs (rs7867029, rs7174015, and rs12870438) were found to be significantly associated with the risk of azoospermia and/or oligozoospermia in a Japanese population. In this study, we investigated whether the rs10966811 (located in an intergenic region between the TUSC1 and IZUMO3 genes) and rs10129954 (located in the DPF3 gene) SNPs, previously related to family size, are associated with male infertility. In addition, we performed association analysis between rs12348 in TUSC1 and rs2772579 in IZUMO3 and male infertility.

methodsWe genotyped 145 patients with infertility (including 83 patients with azoospermia and 62 with oligozoospermia) and 713 fertile controls by PCR-RFLP technique for polymorphism. Because rs10966811 has no restriction sites, the SNP rs12376894 with strong linkage disequilibrium was selected as an alternative to rs10966811.

resultsThere was a statistically significant association between rs12376894 proxy SNP of rs10966811 and oligozoospermia. Also, a statistically significant association between rs10129954 and azoospermia, and oligozoospermia was observed. When we assessed the relationship between rs12348 in TUSC1 and rs2772579 in IZUMO3 and male infertility traits, we found that rs12348 in TUSC1 was significantly associated with azoospermia and oligozoospermia, but rs2772579 in IZUMO3 was not associated with male infertility.

conclusionWe found that the polymorphisms in TUSC1 and DPF3 displayed strong associations with male infertility.

Indexed as

Polymorphism, Single NucleotideAdultAsian PeopleAzoospermiaCase-Control StudiesDNA-Binding ProteinsGene FrequencyGenetic Predisposition to DiseaseHumansImmunoglobulinsInfertility, MaleLogistic ModelsMaleMembrane ProteinsOligospermiaTranscription FactorsDNA-Binding ProteinsDPF3 protein, humanImmunoglobulinsIZUMO3 protein, humanMembrane ProteinsTranscription FactorsTumor Suppressor ProteinsTUSC1 protein, humanAzoospermiaDouble plant homeodomain fingersFamily 3Male infertilityOligozoospermiaSingle nucleotide polymorphismTumor suppressor candidate 1

Identifiers

PMID28975488
PMCPMC5845029
OpenAlexW2761619580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.