Evidence map›Paper›PMID 28975236›Full record

ArticleJAMA ophthalmology2017

Gene Expression Profiling and Heterogeneity of Nonspecific Orbital Inflammation Affecting the Lacrimal Gland.

James T Rosenbaum, Dongseok Choi, Christina A Harrington, David J Wilson, Hans E Grossniklaus, Cailin H Sibley, Sherveen S Salek, John D Ng, Roger A Dailey, Eric A Steele and 23 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in JAMA ophthalmology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 16 institutions in 6 countries.

James T RosenbaumCasey Eye Institute, Oregon Health & Science University, Portland.
Dongseok ChoiCasey Eye Institute, Oregon Health & Science University, Portland.
Christina A HarringtonIntegrated Genomics Laboratory, Oregon Health & Science University, Portland.
David J WilsonCasey Eye Institute, Oregon Health & Science University, Portland.
Hans E GrossniklausDepartment of Ophthalmology, Emory University, Atlanta, Georgia.
Cailin H SibleyDepartment of Medicine, Oregon Health & Science University, Portland.
Sherveen S SalekCasey Eye Institute, Oregon Health & Science University, Portland.
John D NgCasey Eye Institute, Oregon Health & Science University, Portland.
Roger A DaileyCasey Eye Institute, Oregon Health & Science University, Portland.
Eric A SteeleCasey Eye Institute, Oregon Health & Science University, Portland.
Brent HayekDepartment of Ophthalmology, Emory University, Atlanta, Georgia.
Caroline M CravenDepartment of Ophthalmology, Emory University, Atlanta, Georgia.
Deepak P EdwardResearch Department, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Azza M Y MaktabiResearch Department, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Hailah Al HussainResearch Department, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Valerie A WhiteDepartment of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, British Columbia, Canada.
Peter J DolmanDepartment of Ophthalmology and Visual Sciences, University of British Columbia, Vancouver, British Columbia, Canada.
Craig N CzyzDepartment of Ophthalmology, Ohio University, Columbus.
Jill A FosterOphthalmic Surgeons and Consultants of Ohio, Columbus.
Gerald J HarrisDepartment of Ophthalmology, Medical College of Wisconsin, Milwaukee.
Youn-Shen BeeDepartment of Ophthalmology, Kaohsiung Veteran's General Hospital, Kaohsiung City, Taiwan.
David T TseDepartment of Ophthalmology, University of Miami, Miami, Florida.
Chrisfouad R AlabiadDepartment of Ophthalmology, University of Miami, Miami, Florida.
Sander R DubovyDepartment of Ophthalmology, University of Miami, Miami, Florida.
Michael KazimDepartment of Ophthalmology, Columbia University, New York, New York.
Dinesh SelvaOphthalmology Network, Royal Adelaide Hospital, Adelaide, Australia.
R Patrick YeattsDepartment of Ophthalmology, Wake Forest University, Winston-Salem, North Carolina.
Bobby S KornDepartment of Ophthalmology, University of California, San Diego.
Don O KikkawaDepartment of Ophthalmology, University of California, San Diego.
Rona Z Silkisscurrently in private practice in Oakland, California.
Jennifer A Sivak-CallcottDepartment of Ophthalmology, University of West Virginia, Morgantown.
Patrick StaufferCasey Eye Institute, Oregon Health & Science University, Portland.
Stephen R PlanckCasey Eye Institute, Oregon Health & Science University, Portland.
Oregon Health & Science University · USEmory University · USKing Khaled Eye Specialist Hospital · SAUniversity of Miami · USUniversity of British Columbia · CAUniversity of California San Diego · USColumbia University · USIgenbio (United States) · USKaohsiung Veterans General Hospital · TWLegacy Health · USMedical College of Wisconsin · USOhio University · USRoyal Adelaide Hospital · AUThe Ohio State University · USWake Forest University · USWest Virginia University · US

Funding

OREGON CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024140 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI ORWOLL, ERIC S. · 2006 to 2011
$61.1M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Kate E Keller · 1995 to 2026
$19.4M
Gene Expression in Nonspecific Orbital Inflammatory DiseaseR01EY020249 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI ROSENBAUM, JAMES T · 2011 to 2020
$5.0M
NCRR NIH HHS UL1 RR024140NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY020249
6 · The paper itself

Abstract

Importance: Although a variety of well-characterized diseases, such as sarcoidosis and granulomatosis with polyangiitis, affect the lacrimal gland, many patients with dacryoadenitis are diagnosed as having nonspecific orbital inflammation (NSOI) on the basis of histology and systemic disease evaluation. The ability to further classify the disease in these patients should facilitate selection of effective therapies. Objective: To test the a priori hypothesis that gene expression profiles would complement clinical and histopathologic evaluations in identifying well-characterized diseases and in subdividing NSOI into clinically relevant groups. Design, Setting, and Participants: In this cohort study, gene expression levels in biopsy specimens of inflamed and control lacrimal glands were measured with microarrays. Stained sections of the same biopsy specimens were used for evaluation of histopathology. Tissue samples of patients were obtained from oculoplastic surgeons at 7 international centers representing 4 countries (United States, Saudi Arabia, Canada, and Taiwan). Gene expression analysis was done at Oregon Health & Science University. Participants were 48 patients, including 3 with granulomatosis with polyangiitis, 28 with NSOI, 7 with sarcoidosis, 4 with thyroid eye disease, and 6 healthy controls. The study dates were March 2012 to April 2017. Main Outcomes and Measures: The primary outcome was subdivision of biopsy specimens based on gene expression of a published list of approximately 40 differentially expressed transcripts in blood, lacrimal gland, and orbital adipose tissue from patients with sarcoidosis. Stained sections were evaluated for inflammation (none, mild, moderate, or marked), granulomas, nodules, or fibrosis by 2 independent ocular pathologists masked to the clinical diagnosis. Results: Among 48 patients (mean [SD] age, 41.6 [19.0] years; 32 [67%] female), the mclust algorithm segregated the biopsy specimens into 4 subsets, with the differences illustrated by a heat map and multidimensional scaling plots. Most of the sarcoidosis biopsy specimens were in subset 1, which had the highest granuloma score. Three NSOI biopsy specimens in subset 1 had no apparent granulomas. Thirty-two percent (9 of 28) of the NSOI biopsy specimens could not be distinguished from biopsy specimens of healthy controls in subset 4, while other examples of NSOI tended to group with gene expression resembling granulomatosis with polyangiitis or thyroid eye disease. The 4 subsets could also be partially differentiated by their fibrosis, granulomas, and inflammation pathology scores but not their lymphoid nodule scores. Conclusions and Relevance: Gene expression profiling discloses clear heterogeneity among patients with lacrimal inflammatory disease. Comparison of the expression profiles suggests that a subset of patients with nonspecific dacryoadenitis might have a limited form of sarcoidosis, while other patients with NSOI cannot be distinguished from healthy controls.

Indexed as

Gene Expression RegulationAdultBiopsyFemaleGene Expression ProfilingGenetic MarkersHumansLacrimal ApparatusLacrimal Apparatus DiseasesMaleOrbital PseudotumorRetrospective StudiesRNATissue Array AnalysisGenetic MarkersRNA

Identifiers

PMID28975236
PMCPMC6033262
OpenAlexW2757981720

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.