ArticleScientific reports2017
Genome-wide identification and expression analyses of the homeobox transcription factor family during ovule development in seedless and seeded grapes.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.
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20 citing papers in PubMed, 42 citations in OpenAlex.
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- Genome-wide identification and transcript profiles of walnut heat stress transcription factor involved in abiotic stress.BMC genomics · 2020Article
- Identification of Homeobox Genes Associated with Lignification and Their Expression Patterns in Bamboo Shoots.Biomolecules · 2019Article
- The grapevine homeobox gene VvHB58 influences seed and fruit development through multiple hormonal signaling pathways.BMC plant biology · 2019Article
- Genomic Organization of the B3-Domain Transcription Factor Family in Grapevine (International journal of molecular sciences · 2019Article
- Cytological, Biochemical and Molecular Events of the Embryogenic State in Douglas-fir (Frontiers in plant science · 2019Article
- Genome-Wide Analysis of the YABBY Gene Family in Grapevine and Functional Characterization ofFrontiers in plant science · 2019Article
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Corrections and comments
- Erratum issued
Authors and funding
8 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Seedless grapes are of considerable importance for the raisin and table grape industries. Previous transcriptome analyses of seed development in grape revealed that genes encoding homeobox transcription factors were differentially regulated in seedless compared with seeded grape during seed development. In the present study, we identified a total of 73 homeobox-like genes in the grapevine genome and analyzed the genomic content and expression profiles of these genes. Based on domain architecture and phylogenetic analyses grape homeobox genes can be classified into eleven subfamilies. An analysis of the exon-intron structures and conserved motifs provided further insight into the evolutionary relationships between these genes. Evaluation of synteny indicated that segmental and tandem duplications have contributed greatly to the expansion of the grape homeobox gene superfamily. Synteny analysis between the grape and Arabidopsis genomes provided a potential functional relevance for these genes. The tissue-specific expression patterns of homeobox genes suggested roles in both vegetative and reproductive tissues. Expression profiling of these genes during the course of ovule development in seeded and seedless cultivars suggested a potential role in ovule abortion associated with seedlessness. This study will facilitate the functional analysis of these genes and provide new resources for molecular breeding of seedless grapes.
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