Evidence map›Paper›PMID 28973854›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Proteasome-independent polyubiquitin linkage regulates synapse scaffolding, efficacy, and plasticity.

Qi Ma, Hongyu Ruan, Lisheng Peng, Mingjie Zhang, Michaela U Gack, Wei-Dong Yao

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Elevating NeuronalbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
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  7. Diminished Neuronal ESCRT-0 Function Exacerbates AMPA Receptor Derangement and Accelerates Prion-Induced Neurodegeneration.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
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  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The K63 deubiquitinase CYLD modulates autism-like behaviors and hippocampal plasticity by regulating autophagy and mTOR signaling.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Qi MaNew England Primate Research Center, Harvard Medical School, Southborough, MA 01772.
Hongyu RuanNew England Primate Research Center, Harvard Medical School, Southborough, MA 01772.
Lisheng PengNew England Primate Research Center, Harvard Medical School, Southborough, MA 01772.
Mingjie ZhangDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong.
Michaela U GackNew England Primate Research Center, Harvard Medical School, Southborough, MA 01772.
Wei-Dong YaoNew England Primate Research Center, Harvard Medical School, Southborough, MA 01772; yaow@upstate.edu.ORCID 0000-0001-5124-1486
New England Biolabs (United States) · USHong Kong University of Science and Technology · HK

Funding

ZETA CHAIN OF T CELL RECEPTOR INTERACTS W/ NEF OF SIV &HIV2P51RR000168 · NCRR · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WESTMORELAND, SUSAN V. · 1985 to 2011
$139.3M
Nonproteolytic Polyubiquitin Chains at the SynapseR01MH106489 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI YAO, WEI-DONG · 2015 to 2019
$2.1M
Dopaminergic Enabling of Synaptic Plasticity in Prefrontal CircuitsR01DA032283 · NIDA · UPSTATE MEDICAL UNIVERSITY · PI YAO, WEI-DONG · 2011 to 2015
$1.7M
MOUSE MODELS OF CANCER, BONE DISEASE, AND LACTATIONK26RR000168 · NCRR · OHIO STATE UNIVERSITY · PI ROSOL, THOMAS J · 2000 to 2004
$547k
Confocal Microscope at NEPRCS10RR026761 · NCRR · HARVARD MEDICAL SCHOOL · PI YAO, WEI-DONG · 2010 to 2010
$438k
NCRR NIH HHS K26 RR000168NCRR NIH HHS P51 RR000168NCRR NIH HHS S10 RR026761NIDA NIH HHS R01 DA032283NIMH NIH HHS R01 MH106489
6 · The paper itself

Abstract

Ubiquitination-directed proteasomal degradation of synaptic proteins, presumably mediated by lysine 48 (K48) of ubiquitin, is a key mechanism in synapse and neural circuit remodeling. However, more than half of polyubiquitin (polyUb) species in the mammalian brain are estimated to be non-K48; among them, the most abundant is Lys 63 (K63)-linked polyUb chains that do not tag substrates for degradation but rather modify their properties and activity. Virtually nothing is known about the role of these nonproteolytic polyUb chains at the synapse. Here we report that K63-polyUb chains play a significant role in postsynaptic protein scaffolding and synaptic strength and plasticity. We found that the postsynaptic scaffold PSD-95 (postsynaptic density protein 95) undergoes K63 polyubiquitination, which markedly modifies PSD-95's scaffolding potentials, enables its synaptic targeting, and promotes synapse maturation and efficacy. TNF receptor-associated factor 6 (TRAF6) is identified as a direct E3 ligase for PSD-95, which, together with the E2 complex Ubc13/Uev1a, assembles K63-chains on PSD-95. In contrast, CYLD (cylindromatosis tumor-suppressor protein), a K63-specific deubiquitinase enriched in postsynaptic densities, cleaves K63-chains from PSD-95. We found that neuronal activity exerts potent control of global and synaptic K63-polyUb levels and, through NMDA receptors, drives rapid, CYLD-mediated PSD-95 deubiquitination, mobilizing and depleting PSD-95 from synapses. Silencing CYLD in hippocampal neurons abolishes NMDA-induced chemical long-term depression. Our results unveil a previously unsuspected role for nonproteolytic polyUb chains in the synapse and illustrate a mechanism by which a PSD-associated K63-linkage-specific ubiquitin machinery acts on a major postsynaptic scaffold to regulate synapse organization, function, and plasticity.

Indexed as

Post-Synaptic DensityAnimalsDisks Large Homolog 4 ProteinHippocampusLysineMiceMice, KnockoutNeuronsPolyubiquitinProteasome Endopeptidase ComplexSynapsesUbiquitinationDisks Large Homolog 4 ProteinDlg4 protein, mouseLysinePolyubiquitinProteasome Endopeptidase ComplexCYLDlong-term depressionlysine 63-linked ubiquitinationPSD-95TRAF6

Identifiers

PMID28973854
PMCPMC5642675
OpenAlexW2761411364

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.