Evidence map›Paper›PMID 28973460›Full record

ArticleNucleic acids research2017

Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3'-end processing.

Julia Guéguéniat, Adrien F Dupin, Johan Stojko, Lionel Beaurepaire, Sarah Cianférani, Cameron D Mackereth, Lionel Minvielle-Sébastia, Sébastien Fribourg

Open access · goldAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Premature transcription termination complex proteins PCF11 and WDR82 silence HIV-1 expression in latently infected cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Review
  7. Review
  8. Requirement for cleavage factor IIRNA (New York, N.Y.) · 2020
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Julia GuéguéniatUniversité de Bordeaux, INSERM U1212, CNRS UMR5320, Bordeaux, France.
Adrien F DupinUniversité de Bordeaux, INSERM U1212, CNRS UMR5320, Bordeaux, France.
Johan StojkoLaboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC UMR 7178, 67000 Strasbourg, France.
Lionel BeaurepaireUniversité de Bordeaux, INSERM U1212, CNRS UMR5320, Bordeaux, France.
Sarah CianféraniLaboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC UMR 7178, 67000 Strasbourg, France.
Cameron D MackerethUniversité de Bordeaux, INSERM U1212, CNRS UMR5320, Bordeaux, France.
Lionel Minvielle-SébastiaUniversité de Bordeaux, INSERM U1212, CNRS UMR5320, Bordeaux, France.
Sébastien FribourgUniversité de Bordeaux, INSERM U1212, CNRS UMR5320, Bordeaux, France.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

New transcripts generated by RNA polymerase II (RNAPII) are generally processed in order to form mature mRNAs. Two key processing steps include a precise cleavage within the 3' end of the pre-mRNA, and the subsequent polymerization of adenosines to produce the poly(A) tail. In yeast, these two functions are performed by a large multi-subunit complex that includes the Cleavage Factor IA (CF IA). The four proteins Pcf11, Clp1, Rna14 and Rna15 constitute the yeast CF IA, and of these, Pcf11 is structurally the least characterized. Here, we provide evidence for the binding of two Zn2+ atoms to Pcf11, bound to separate zinc-binding domains located on each side of the Clp1 recognition region. Additional structural characterization of the second zinc-binding domain shows that it forms an unusual zinc finger fold. We further demonstrate that the two domains are not mandatory for CF IA assembly nor RNA polymerase II transcription termination, but are rather involved to different extents in the pre-mRNA 3'-end processing mechanism. Our data thus contribute to a more complete understanding of the architecture and function of Pcf11 and its role within the yeast CF IA complex.

Indexed as

3' Untranslated RegionsAmino Acid SequenceBinding SitesModels, MolecularmRNA Cleavage and Polyadenylation FactorsProtein BindingProtein ConformationProtein DomainsRNA 3' End ProcessingRNA, FungalRNA Polymerase IIRNA PrecursorsSaccharomyces cerevisiae ProteinsSequence AlignmentSequence Homology, Amino AcidThermodynamics3' Untranslated RegionsCF IA protein, S cerevisiaeClp1 protein, S cerevisiaemRNA Cleavage and Polyadenylation FactorsPCF11 protein, S cerevisiaeRNA, FungalRNA Polymerase IIRNA PrecursorsSaccharomyces cerevisiae ProteinsZinc

Identifiers

PMID28973460
PMCPMC5737669
OpenAlexW2740307583

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.