Evidence map›Paper›PMID 28973046›Full record

ArticlePloS one2017

In vivo and in vitro protein imaging in thermophilic archaea by exploiting a novel protein tag.

Valeria Visone, Wenyuan Han, Giuseppe Perugino, Giovanni Del Monaco, Qunxin She, Mosè Rossi, Anna Valenti, Maria Ciaramella

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Microbial single-cell applications under anoxic conditions.Applied and environmental microbiology · 2024
    Review
  2. Review
  3. A fluorescent reporter system for anaerobic thermophiles.Frontiers in bioengineering and biotechnology · 2023
    Article
  4. First thermostable CLIP-Computational and structural biotechnology journal · 2022
    Article
  5. The SNAP-Journal of enzyme inhibition and medicinal chemistry · 2021
    Article
  6. Article
  7. International journal of molecular sciences · 2020
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Every OGT Is Illuminated … by Fluorescent and Synchrotron Lights.International journal of molecular sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Valeria VisoneInstitute of Biosciences and Bioresources, National Research Council of Italy, Napoli, Italy.
Wenyuan HanDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Giuseppe PeruginoInstitute of Biosciences and Bioresources, National Research Council of Italy, Napoli, Italy.
Giovanni Del MonacoInstitute of Biosciences and Bioresources, National Research Council of Italy, Napoli, Italy.
Qunxin SheDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Mosè RossiInstitute of Biosciences and Bioresources, National Research Council of Italy, Napoli, Italy.
Anna ValentiInstitute of Biosciences and Bioresources, National Research Council of Italy, Napoli, Italy.
Maria CiaramellaInstitute of Biosciences and Bioresources, National Research Council of Italy, Napoli, Italy.ORCID http://orcid.org/0000-0003-1583-1694
Institute of Biosciences and Bioresources · ITUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein imaging, allowing a wide variety of biological studies both in vitro and in vivo, is of great importance in modern biology. Protein and peptide tags fused to proteins of interest provide the opportunity to elucidate protein location and functions, detect protein-protein interactions, and measure protein activity and kinetics in living cells. Whereas several tags are suitable for protein imaging in mesophilic organisms, the application of this approach to microorganisms living at high temperature has lagged behind. Archaea provide an excellent and unique model for understanding basic cell biology mechanisms. Here, we present the development of a toolkit for protein imaging in the hyperthermophilic archaeon Sulfolobus islandicus. The system relies on a thermostable protein tag (H5) constructed by engineering the alkylguanine-DNA-alkyl-transferase protein of Sulfolobus solfataricus, which can be covalently labeled using a wide range of small molecules. As a suitable host, we constructed, by CRISPR-based genome-editing technology, a S. islandicus mutant strain deleted for the alkylguanine-DNA-alkyl-transferase gene (Δogt). Introduction of a plasmid-borne H5 gene in this strain led to production of a functional H5 protein, which was successfully labeled with appropriate fluorescent molecules and visualized in cell extracts as well as in Δogt live cells. H5 was fused to reverse gyrase, a peculiar thermophile-specific DNA topoisomerase endowed with positive supercoiling activity, and allowed visualization of the enzyme in living cells. To the best of our knowledge, this is the first report of in vivo imaging of any protein of a thermophilic archaeon, filling an important gap in available tools for cell biology studies in these organisms.

Indexed as

ArchaeaArchaeal ProteinsDNA Topoisomerases, Type IHot TemperatureSulfolobusSulfolobus solfataricusArchaeal ProteinsDNA Topoisomerases, Type I

Identifiers

PMID28973046
PMCPMC5626487
OpenAlexW2763513988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.