Evidence map›Paper›PMID 28972162›Full record

ArticleThe Journal of biological chemistry2017

Human DNA polymerase η accommodates RNA for strand extension.

Yan Su, Martin Egli, F Peter Guengerich

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. DNA polymerase ζ is a robust reverse transcriptase.bioRxiv : the preprint server for biology · 2024
    Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Multifaceted Nature of DNA Polymerase θ.International journal of molecular sciences · 2023
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Etheno adducts: from tRNA modifications to DNA adducts and back to miscoding ribonucleotides.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yan SuFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146.
Martin EgliFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146.ORCID 0000-0003-4145-356X
F Peter GuengerichFrom the Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146 f.guengerich@vanderbilt.edu.ORCID 0000-0002-7458-3048
Vanderbilt University · US

Funding

Synthetic Approaches to Carcinogen-Linked OligonucleotidesP01CA160032 · NCI · VANDERBILT UNIVERSITY · PI STONE, MICHAEL P · 2012 to 2022
$14.0M
BIOACTIVATION OF HALOGENATED HYDROCARBONSR01ES010546 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 2001 to 2020
$8.1M
Mechanisms of Copying of Carcinogen-damaged DNA and RNA by Translesion PolymerasesR01ES026955 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 2017 to 2021
$1.8M
NCI NIH HHS P01 CA160032NIEHS NIH HHS R01 ES010546NIEHS NIH HHS R01 ES026955
6 · The paper itself

Abstract

Ribonucleotides are the natural analogs of deoxyribonucleotides, which can be misinserted by DNA polymerases, leading to the most abundant DNA lesions in genomes. During replication, DNA polymerases tolerate patches of ribonucleotides on the parental strands to different extents. The majority of human DNA polymerases have been reported to misinsert ribonucleotides into genomes. However, only PrimPol, DNA polymerase α, telomerase, and the mitochondrial human DNA polymerase (hpol) γ have been shown to tolerate an entire RNA strand. Y-family hpol η is known for translesion synthesis opposite the UV-induced DNA lesion cyclobutane pyrimidine dimer and was recently found to incorporate ribonucleotides into DNA. Here, we report that hpol η is able to bind DNA/DNA, RNA/DNA, and DNA/RNA duplexes with similar affinities. In addition, hpol η, as well as another Y-family DNA polymerase, hpol κ, accommodates RNA as one of the two strands during primer extension, mainly by inserting dNMPs opposite unmodified templates or DNA lesions, such as 8-oxo-2'-deoxyguanosine or cyclobutane pyrimidine dimer, even in the presence of an equal amount of the DNA/DNA substrate. The discovery of this RNA-accommodating ability of hpol η redefines the traditional concept of human DNA polymerases and indicates potential new functions of hpol η

Indexed as

Transcription Elongation, Genetic8-Hydroxy-2'-DeoxyguanosineBase Pair MismatchDeoxyguanosineDNA-Directed DNA PolymeraseDNA PrimersDNA ReplicationElectrophoretic Mobility Shift AssayHumansKineticsNucleic Acid HeteroduplexesNucleic Acid HybridizationOligodeoxyribonucleotidesOligoribonucleotidesPyrimidine DimersRecombinant Proteins8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDNA-Directed DNA PolymeraseDNA PrimersNucleic Acid HeteroduplexesOligodeoxyribonucleotidesOligoribonucleotidesPOLK protein, humanPyrimidine DimersRad30 proteinRecombinant ProteinsRNARNA primersY-Family DNA PolymerasesDNA damageDNA enzymeDNA enzymesDNA polymerasereplication initiationreverse transcriptasereverse transcriptionRNA

Identifiers

PMID28972162
PMCPMC5672030
OpenAlexW2762403097

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.