Evidence map›Paper›PMID 28971542›Full record

ArticleProtein science : a publication of the Protein Society2018

Scipion web tools: Easy to use cryo-EM image processing over the web.

Pablo Conesa Mingo, José Gutierrez, Adrián Quintana, José Miguel de la Rosa Trevín, Airén Zaldívar-Peraza, Jesús Cuenca Alba, Mohsen Kazemi, Javier Vargas, Laura Del Cano, Joan Segura and 2 more

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Structural atlas ofbioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Integrative structural analysis ofResearch square · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Journal of applied crystallography · 2022
    Article
  12. Article
  13. Structures of pseudorabies virus capsids.Nature communications · 2022
    Article
  14. Local resolution estimates of cryoEM reconstructions.Current opinion in structural biology · 2020
    Review
  15. CM01: a facility for cryo-electron microscopy at the European Synchrotron.Acta crystallographica. Section D, Structural biology · 2019
    Article
  16. eLife · 2018
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Pablo Conesa MingoCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
José GutierrezCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Adrián QuintanaCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
José Miguel de la Rosa TrevínCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Airén Zaldívar-PerazaCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Jesús Cuenca AlbaCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Mohsen KazemiCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Javier VargasCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Laura Del CanoCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Joan SeguraCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Carlos Oscar S SorzanoCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Jose María CarazoCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macromolecular structural determination by Electron Microscopy under cryogenic conditions is revolutionizing the field of structural biology, interesting a large community of potential users. Still, the path from raw images to density maps is complex, and sophisticated image processing suites are required in this process, often demanding the installation and understanding of different software packages. Here, we present Scipion Web Tools, a web-based set of tools/workflows derived from the Scipion image processing framework, specially tailored to nonexpert users in need of very precise answers at several key stages of the structural elucidation process.

Indexed as

Cryoelectron MicroscopyImage Processing, Computer-AssistedInternetSoftwarecryo-electron microscopyvalidationvisualizationweb toolsworkflow

Identifiers

PMID28971542
PMCPMC5734268

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.