Evidence map›Paper›PMID 28970104›Full record

ArticleJournal of molecular biology2017

Nucleotide Binding to ARL2 in the TBCD∙ARL2∙β-Tubulin Complex Drives Conformational Changes in β-Tubulin.

Joshua W Francis, Devrishi Goswami, Scott J Novick, Bruce D Pascal, Emily R Weikum, Eric A Ortlund, Patrick R Griffin, Richard A Kahn

Abstract read
In one paragraph

Article in Journal of molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. The Arf family GTPases: Regulation of vesicle biogenesis and beyond.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Review
  5. Article
  6. Article
  7. Roles for ELMOD2 and Rootletin in ciliogenesis.Molecular biology of the cell · 2021
    Article
  8. Article
  9. ARF family GTPases with links to cilia.American journal of physiology. Cell physiology · 2020
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Compositional complexity of rods and rings.Molecular biology of the cell · 2018
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Joshua W FrancisDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, United States.
Devrishi GoswamiDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Scott J NovickDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Bruce D PascalDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Emily R WeikumDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, United States.
Eric A OrtlundDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, United States.
Patrick R GriffinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, United States.
Richard A KahnDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, United States. Electronic address: rkahn@emory.edu.
Emory University · USScripps Research Institute · US

Funding

Molecular mechanisms of ARF family GTPasesR35GM122568 · NIGMS · EMORY UNIVERSITY · PI KAHN, RICHARD A · 2017 to 2024
$3.7M
The Regulation and Cellular Activities of the ARL2 GTPaseR01GM090158 · NIGMS · EMORY UNIVERSITY · PI KAHN, RICHARD A · 2010 to 2017
$2.5M
Targeting LRH-1 - Phospholipid Signaling in Metabolic PathwaysR01DK095750 · NIDDK · EMORY UNIVERSITY · PI ORTLUND, ERIC A · 2012 to 2016
$1.7M
Acquisition of a LTQ/Orbitrap MS to advance the study of protein dynamicsS10RR027270 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI GRIFFIN, PATRICK ROBERT · 2010 to 2010
$500k
A Novel Mechanism of GTPase Regulation: Arl2 Interaction with TBCDF31CA189672 · NCI · EMORY UNIVERSITY · PI FRANCIS, JOSHUA W · 2014 to 2016
$126k
A Novel Mechanism for the Glucocorticoid Receptor in Inflammatory Gene RegulationF31GM113397 · NIGMS · EMORY UNIVERSITY · PI WEIKUM, EMILY RYE · 2015 to 2017
$111k
NCI NIH HHS F31 CA189672NCRR NIH HHS S10 RR027270NIDDK NIH HHS R01 DK095750NIGMS NIH HHS F31 GM113397NIGMS NIH HHS R01 GM090158NIGMS NIH HHS R35 GM122568
6 · The paper itself

Abstract

Microtubules are highly dynamic tubulin polymers that are required for a variety of cellular functions. Despite the importance of a cellular population of tubulin dimers, we have incomplete information about the mechanisms involved in the biogenesis of αβ-tubulin heterodimers. In addition to prefoldin and the TCP-1 Ring Complex, five tubulin-specific chaperones, termed cofactors A-E (TBCA-E), and GTP are required for the folding of α- and β-tubulin subunits and assembly into heterodimers. We recently described the purification of a novel trimer, TBCD•ARL2•β-tubulin. Here, we employed hydrogen/deuterium exchange coupled with mass spectrometry to explore the dynamics of each of the proteins in the trimer. Addition of guanine nucleotides resulted in changes in the solvent accessibility of regions of each protein that led to predictions about each's role in tubulin folding. Initial testing of that model confirmed that it is ARL2, and not β-tubulin, that exchanges GTP in the trimer. Comparisons of the dynamics of ARL2 monomer to ARL2 in the trimer suggested that its protein interactions were comparable to those of a canonical GTPase with an effector. This was supported by the use of nucleotide-binding assays that revealed an increase in the affinity for GTP by ARL2 in the trimer. We conclude that the TBCD•ARL2•β-tubulin complex represents a functional intermediate in the β-tubulin folding pathway whose activity is regulated by the cycling of nucleotides on ARL2. The co-purification of guanine nucleotide on the β-tubulin in the trimer is also shown, with implications to modeling the pathway.

Indexed as

GTP-Binding ProteinsGuanosine 5'-O-(3-Thiotriphosphate)HEK293 CellsHumansMicrotubule-Associated ProteinsMicrotubulesProtein ConformationProtein FoldingSignal TransductionTubulinARL2 protein, humanGTP-Binding ProteinsGuanosine 5'-O-(3-Thiotriphosphate)Microtubule-Associated ProteinsTBCD protein, humanTubulinARL2Cofactor DGTPaseTBCDTubulin

Identifiers

PMID28970104
PMCPMC5693757
OpenAlexW2758757354

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.