Evidence map›Paper›PMID 28969662›Full record

ArticleParasites & vectors2017

O-5S quantitative real-time PCR: a new diagnostic tool for laboratory confirmation of human onchocerciasis.

Solomon A Mekonnen, Marcus Beissner, Malkin Saar, Solomon Ali, Ahmed Zeynudin, Kassahun Tesfaye, Mulatu G Adbaru, Florian Battke, Sven Poppert, Michael Hoelscher and 3 more

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Duplex Real-Time PCR Assay for Clinical Differentiation ofThe American journal of tropical medicine and hygiene · 2020
    Article
  6. NTD Diagnostics for Disease Elimination: A Review.Diagnostics (Basel, Switzerland) · 2020
    Review
  7. Onchocerciasis Elimination: Progress and Challenges.Research and reports in tropical medicine · 2020
    Review
  8. Article
  9. Onchodermatitis: Where Are We Now?Tropical medicine and infectious disease · 2018
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Solomon A MekonnenDepartment of Medical Laboratory Sciences and Pathology, College of Health Sciences, Jimma University, Jimma, Ethiopia. selemonye@gmail.com.
Marcus BeissnerDepartment of Infectious Diseases and Tropical Medicine, Medical Center of the University of Munich, Munich, Germany.
Malkin SaarDepartment of Infectious Diseases and Tropical Medicine, Medical Center of the University of Munich, Munich, Germany.
Solomon AliDepartment of Medical Laboratory Sciences and Pathology, College of Health Sciences, Jimma University, Jimma, Ethiopia.
Ahmed ZeynudinDepartment of Medical Laboratory Sciences and Pathology, College of Health Sciences, Jimma University, Jimma, Ethiopia.
Kassahun TesfayeDepartment Microbial, Cellular and Molecular Biology, Addis Ababa University, Addis Ababa, Ethiopia.
Mulatu G AdbaruDepartment of Medical Laboratory Sciences and Pathology, College of Health Sciences, Jimma University, Jimma, Ethiopia.
Florian BattkeDr. Battke SCIENTIA GmbH, Taufkirchen, Germany.
Sven PoppertUniversity Medical Center Hamburg-Eppendorf, University of Hamburg, Hamburg, Germany.
Michael HoelscherDepartment of Infectious Diseases and Tropical Medicine, Medical Center of the University of Munich, Munich, Germany.
Thomas LöscherDepartment of Infectious Diseases and Tropical Medicine, Medical Center of the University of Munich, Munich, Germany.
Gisela BretzelDepartment of Infectious Diseases and Tropical Medicine, Medical Center of the University of Munich, Munich, Germany.
Karl-Heinz HerbingerDepartment of Infectious Diseases and Tropical Medicine, Medical Center of the University of Munich, Munich, Germany.
Ludwig-Maximilians-Universität München · DEJimma University · ETAddis Ababa University · ETGerman Center for Infection Research · DEUniversität Hamburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOnchocerciasis is a parasitic disease caused by the filarial nematode Onchocerca volvulus. In endemic areas, the diagnosis is commonly confirmed by microscopic examination of skin snip samples, though this technique is considered to have low sensitivity. The available melting-curve based quantitative real-time PCR (qPCR) using degenerated primers targeting the O-150 repeat of O. volvulus was considered insufficient for confirming the individual diagnosis, especially in elimination studies. This study aimed to improve detection of O. volvulus DNA in clinical samples through the development of a highly sensitive qPCR assay.

methodsA novel hydrolysis probe based qPCR assay was designed targeting the specific sequence of the O. volvulus O-5S rRNA gene. A total of 200 clinically suspected onchocerciasis cases were included from Goma district in South-west Ethiopia, from October 2012 through May 2013. Skin snip samples were collected and subjected to microscopy, O-150 qPCR, and the novel O-5S qPCR.

resultsAmong the 200 individuals, 133 patients tested positive (positivity rate of 66.5%) and 67 negative by O-5S qPCR, 74 tested positive by microscopy (37.0%) and 78 tested positive by O-150 qPCR (39.0%). Among the 133 O-5S qPCR positive individuals, microscopy and O-150 qPCR detected 55.6 and 59.4% patients, respectively, implying a higher sensitivity of O-5S qPCR than microscopy and O-150 qPCR. None of the 67 individuals who tested negative by O-5S qPCR tested positive by microscopy or O-150 qPCR, implying 100% specificity of the newly designed O-5S qPCR assay.

conclusionsThe novel O-5S qPCR assay is more sensitive than both microscopic examination and the existing O-150 qPCR for the detection of O. volvulus from skin snip samples. The newly designed assay is an important step towards appropriate individual diagnosis and control of onchocerciasis.

Indexed as

AdultAgedAnimalsDNA, HelminthDNA PrimersEthiopiaFemaleHumansMaleMiddle AgedOnchocerca volvulusOnchocerciasisReal-Time Polymerase Chain ReactionSensitivity and SpecificitySkinDNA, HelminthDNA PrimersConfirmationEthiopiaMicroscopyMolecular diagnosisO-150 qPCRO-5S qPCROnchocerciasis

Identifiers

PMID28969662
PMCPMC5625774
OpenAlexW2760843049

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.