Evidence map›Paper›PMID 28969594›Full record

ArticleBMC nephrology2017

Identification of compound heterozygous patients with primary hyperoxaluria type 1: clinical evaluations and in silico investigations.

Houda Kanoun, Faiçal Jarraya, Bayen Maalej, Amina Lahiani, Hichem Mahfoudh, Fatma Makni, Jamil Hachicha, Faiza Fakhfakh

Open access · goldAbstract read
In one paragraph

Article in BMC nephrology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  4. Genetics and genomic medicine in Tunisia.Molecular genetics & genomic medicine · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Houda KanounLaboratoire de Génétique Moléculaire Humaine, Faculté de Médecine de Sfax, Université de Sfax, Sfax, Tunisie. houda.kanoun@gmail.com.
Faiçal JarrayaUnité de Recherche Pathologie rénale UR12ES14 et Service de Néphrologie, Hôpital Hédi Chaker Sfax, Sfax, Tunisia.
Bayen MaalejUnité de Recherche Pathologie rénale UR12ES14 et Service de Néphrologie, Hôpital Hédi Chaker Sfax, Sfax, Tunisia.
Amina LahianiLaboratoire de Biochimie, Hôpital Habib Bourguiba Sfax, Sfax, Tunisia.
Hichem MahfoudhUnité de Recherche Pathologie rénale UR12ES14 et Service de Néphrologie, Hôpital Hédi Chaker Sfax, Sfax, Tunisia.
Fatma MakniLaboratoire de Biochimie, Hôpital Habib Bourguiba Sfax, Sfax, Tunisia.
Jamil HachichaUnité de Recherche Pathologie rénale UR12ES14 et Service de Néphrologie, Hôpital Hédi Chaker Sfax, Sfax, Tunisia.
Faiza FakhfakhLaboratoire de Génétique Moléculaire Humaine, Faculté de Médecine de Sfax, Université de Sfax, Sfax, Tunisie. faiza.fakhfakh02@gmail.com.
Hopital Universitaire Hedi Chaker · TNHopital Universitaire Habib Bourguiba · TNUniversity of Sfax · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPrimary hyperoxaluria type 1 (PH1) is an autosomal recessive inherited disorder of glyoxylate metabolism in which excessive oxalates are formed by the liver and excreted by the kidneys. Calcium oxalate crystallizes in the urine, leading to urolithiasis, nephrocalcinosis, and consequent renal failure if treatment is not initiated promptly. Mutations in the AGXT gene which encodes the hepatic peroxisomal enzyme alanine:glyoxylate aminotransferase are responsible of PH1. In the present work, we aimed to analyze AGXT gene and in silico investigations performed in four patients with PH1 among two non consanguineous families.

methodsExhaustive gene sequencing was performed after PCR amplification of coding exons and introns boundaries. Bioinformatic tools were used to predict the impact of AGXT variants on gene expression as well as on the protein structure and function.

resultsDirect sequencing of all exons of AGXT gene revealed the emergence of multiple mutations in compound heterozygous state in the two studied families. Two patients were compound heterozygous for the c.731 T > C, c.32C > T, c.1020A > G and c.33_34insC and presented clinically with recurrent urinary tract infection, multiple urolithiasis and nephrocalcinosis under the age of 1 year and a persistent hyperoxaluria at the age of diagnosis. The two other patients presenting a less severe phenotypes were heterozygous for c.731 T > C and homozygous for the c.32C > T and c.1020A > G or compound heterozygous for c.26C > A and c.65A > G variants.

conclusionIn Summary, we provided relevance regarding the compound heterozygous mutations in non consanguineous PH1 families with variable severity.

Indexed as

Computer SimulationAdultAmino Acid SequenceChildChild, PreschoolFemaleGenetic Carrier ScreeningHumansHyperoxaluria, PrimaryMaleMutationPedigreeProtein Structure, SecondarySequence Analysis, DNATransaminasesAlanine-glyoxylate transaminaseTransaminasesAGTAGXT geneCompound heterozygousMutationPrimary hyperoxaluria type 1

Identifiers

PMID28969594
PMCPMC5625645
OpenAlexW2762557975

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.