Evidence map›Paper›PMID 28969587›Full record

ArticleBMC infectious diseases2017

Investigation of Salmonella Enteritidis outbreaks in South Africa using multi-locus variable-number tandem-repeats analysis, 2013-2015.

Munyadziwa Muvhali, Anthony Marius Smith, Andronica Moipone Rakgantso, Karen Helena Keddy

Abstract read
In one paragraph

Article in BMC infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
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19citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
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  11. Frequency of Antimicrobial Resistance Genes inFrontiers in microbiology · 2020
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  12. Development and Evaluation of an iiPCR Assay forThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2020
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  13. Article
  14. Detection and Molecular Identification ofPathogens (Basel, Switzerland) · 2019
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  15. Outbreak ofFoodborne pathogens and disease · 2019
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  16. Article
  17. Review
  18. Detection of Salmonella from animal sources in South Africa between 2007 and 2014.Journal of the South African Veterinary Association · 2018
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Munyadziwa MuvhaliCentre for Enteric Diseases, National Institute for Communicable Diseases, Johannesburg, South Africa. mmuvhali@gmail.com.
Anthony Marius SmithCentre for Enteric Diseases, National Institute for Communicable Diseases, Johannesburg, South Africa.
Andronica Moipone RakgantsoOutbreak Response Unit, Division of Public Health Surveillance and Response, National Institute for Communicable Diseases, Johannesburg, South Africa.
Karen Helena KeddyCentre for Enteric Diseases, National Institute for Communicable Diseases, Johannesburg, South Africa.

Funding

CGH CDC HHS U19 GH000571
6 · The paper itself

Abstract

backgroundSalmonella enterica serovar Enteritidis (Salmonella Enteritidis) has become a significant pathogen in South Africa, and the need for improved molecular surveillance of this pathogen has become important. Over the years, multi-locus variable-number tandem-repeats analysis (MLVA) has become a valuable molecular subtyping technique for Salmonella, particularly for highly homogenic serotypes such as Salmonella Enteritidis. This study describes the use of MLVA in the molecular epidemiological investigation of outbreak isolates in South Africa.

methodsBetween the years 2013 and 2015, the Centre for Enteric Diseases (CED) received 39 Salmonella Enteritidis isolates from seven foodborne illness outbreaks, which occurred in six provinces. MLVA was performed on all isolates.

resultsThree MLVA profiles (MLVA profiles 21, 22 and 28) were identified among the 39 isolates. MLVA profile 28 accounted for 77% (30/39) of the isolates. Isolates from a single outbreak were grouped into a single MLVA profile. A minimum spanning tree (MST) created from the MLVA data showed a close relationship between MLVA profiles 21, 22 and 28, with a single VNTR locus difference between them.

conclusionsMLVA has proven to be a reliable method for the molecular epidemiological investigation of Salmonella Enteritidis outbreaks in South Africa. These foodborne outbreaks emphasize the importance of the One Health approach as an essential component for combating the spread of zoonotic pathogens such as Salmonella Enteritidis.

Indexed as

Minisatellite RepeatsDisease OutbreaksHumansMolecular EpidemiologySalmonella enteritidisSalmonella InfectionsSouth AfricaMulti-locus variable-number tandem-repeats analysis (MLVA)Non-typhoidal Salmonella (NTS)Salmonella EnteritidisSalmonella outbreaksVariable-number tandem-repeat (VNTR)

Identifiers

PMID28969587
PMCPMC5625639

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.