Evidence map›Paper›PMID 28968734›Full record

ArticleBriefings in bioinformatics2019

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

Kazutaka Katoh, John Rozewicki, Kazunori D Yamada

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4,314 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4,314citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4,314 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  17. The Complete Chloroplast Genome ofEcology and evolution · 2026
    Article
  18. Adaptation to heat stress by diversification of the vertebrate heat shock transcription factor family.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Review
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4,254 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kazutaka Katoh
John Rozewicki
Kazunori D Yamada

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This article describes several features in the MAFFT online service for multiple sequence alignment (MSA). As a result of recent advances in sequencing technologies, huge numbers of biological sequences are available and the need for MSAs with large numbers of sequences is increasing. To extract biologically relevant information from such data, sophistication of algorithms is necessary but not sufficient. Intuitive and interactive tools for experimental biologists to semiautomatically handle large data are becoming important. We are working on development of MAFFT toward these two directions. Here, we explain (i) the Web interface for recently developed options for large data and (ii) interactive usage to refine sequence data sets and MSAs.

Indexed as

SoftwareAlgorithmsComputational BiologyDatabases, GeneticInternetSequence AlignmentSequence AnalysisUser-Computer Interfacemultiple sequence alignmentphylogenetic treesequence analysis

Identifiers

PMID28968734
PMCPMC6781576

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.