Evidence map›Paper›PMID 28968219›Full record

ArticleeLife2017

Site-specific monoubiquitination downregulates Rab5 by disrupting effector binding and guanine nucleotide conversion.

Donghyuk Shin, Wooju Na, Ji-Hyung Lee, Gyuhee Kim, Jiseok Baek, Seok Hee Park, Cheol Yong Choi, Sangho Lee

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  13. lncRNA HITT inhibits metastasis by attenuating Rab5-mediated endocytosis in lung adenocarcinoma.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Article
  14. Article
  15. Review
  16. Review
  17. Cracking the Monoubiquitin Code of Genetic Diseases.International journal of molecular sciences · 2020
    Review
  18. Article
  19. Article
  20. Cell Clearing Systems Bridging Neuro-Immunity and Synaptic Plasticity.International journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Donghyuk ShinDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.ORCID 0000-0002-8272-6133
Wooju NaDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.
Ji-Hyung LeeDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.
Gyuhee KimDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.
Jiseok BaekDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.
Seok Hee ParkDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.
Cheol Yong ChoiDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.
Sangho LeeDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Korea.ORCID 0000-0003-3886-4579
Sungkyunkwan University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rab GTPases, which are involved in intracellular trafficking pathways, have recently been reported to be ubiquitinated. However, the functions of ubiquitinated Rab proteins remain unexplored. Here we show that Rab5 is monoubiquitinated on K116, K140, and K165. Upon co-transfection with ubiquitin, Rab5 exhibited abnormalities in endosomal localization and EGF-induced EGF receptor degradation. Rab5 K140R and K165R mutants restored these abnormalities, whereas K116R did not. We derived structural models of individual monoubiquitinated Rab5 proteins (mUbRab5s) by solution scattering and observed different conformational flexibilities in a site-specific manner. Structural analysis combined with biochemical data revealed that interactions with downstream effectors were impeded in mUbRab5

Indexed as

Down-RegulationUbiquitinationCell LineDNA Mutational AnalysisGuanine NucleotidesHumansHydrolysisProtein BindingProtein Conformationrab5 GTP-Binding ProteinsScattering, Small AngleGuanine Nucleotidesrab5 GTP-Binding ProteinsbiochemistrybiophysicsnoneRab5SAXSstructural biologyubiquitination

Identifiers

PMID28968219
PMCPMC5624781
OpenAlexW2762449659

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.