Evidence map›Paper›PMID 28967923›Full record

ArticleNature chemical biology2017

Regulation of nitric oxide signaling by formation of a distal receptor-ligand complex.

Yirui Guo, Daniel L M Suess, Mark A Herzik, Anthony T Iavarone, R David Britt, Michael A Marletta

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Metalloprotein enabled redox signal transduction in microbes.Current opinion in chemical biology · 2023
    Review
  3. The Mechanism of Biochemical NO-Sensing: Insights from Computational Chemistry.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Yirui GuoCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, California, USA.
Daniel L M SuessDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Mark A HerzikDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, USA.
Anthony T IavaroneCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, California, USA.
R David BrittDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Michael A MarlettaCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, California, USA.
QB3 · USUniversity of California, Berkeley · USUniversity of California, Davis · US

Funding

Mechanisms of Radical SAM Enzymes Probed by EPR SpectroscopyR01GM104543 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BRITT, R DAVID · 2014 to 2017
$1.2M
High Definition Ion Mobility SpectrometerS10OD020062 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI WILLIAMS, EVAN R · 2015 to 2015
$590k
Mechanistic Investigations of [FeFe] Hydrogenase H-Cluster AssemblyF32GM111025 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SUESS, DANIEL LEIF MIGDOW · 2014 to 2016
$158k
NIGMS NIH HHS F32 GM111025NIGMS NIH HHS R01 GM104543NIH HHS S10 OD020062
6 · The paper itself

Abstract

The binding of nitric oxide (NO) to the heme cofactor of heme-nitric oxide/oxygen binding (H-NOX) proteins can lead to the dissociation of the heme-ligating histidine residue and yield a five-coordinate nitrosyl complex, an important step for NO-dependent signaling. In the five-coordinate nitrosyl complex, NO can reside on either the distal or proximal side of the heme, which could have a profound influence over the lifetime of the in vivo signal. To investigate this central molecular question, we characterized the Shewanella oneidensis H-NOX (So H-NOX)-NO complex biophysically under limiting and excess NO conditions. The results show that So H-NOX preferably forms a distal NO species with both limiting and excess NO. Therefore, signal strength and complex lifetime in vivo will be dictated by the dissociation rate of NO from the distal complex and the rebinding of the histidine ligand to the heme.

Indexed as

Signal TransductionBacterial ProteinsHistidine KinaseLigandsModels, MolecularNitric OxideShewanellaBacterial ProteinsHistidine KinaseLigandsNitric Oxide

Identifiers

PMID28967923
PMCPMC5698159
OpenAlexW2763578120

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.