Evidence map›Paper›PMID 28967912›Full record

ArticleNature genetics2017

Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability.

Ryan Rickels, Hans-Martin Herz, Christie C Sze, Kaixiang Cao, Marc A Morgan, Clayton K Collings, Maria Gause, Yoh-Hei Takahashi, Lu Wang, Emily J Rendleman and 9 more

Abstract read
In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 230 citations in OpenAlex.

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  17. Liquid condensates: a new barrier to loop extrusion?Cellular and molecular life sciences : CMLS · 2025
    Review
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  20. Article

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Ryan RickelsDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Hans-Martin HerzStowers Institute for Medical Research, Kansas City, Missouri, USA.
Christie C SzeDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Kaixiang CaoDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Marc A MorganDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Clayton K CollingsDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Maria GauseDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, Missouri, USA.
Yoh-Hei TakahashiDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Lu WangDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Emily J RendlemanDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Stacy A MarshallDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Annika KruegerStowers Institute for Medical Research, Kansas City, Missouri, USA.
Elizabeth T BartomDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Andrea PiuntiDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Edwin R SmithDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.
Nebiyu A AbshiruDepartment of Chemistry, Northwestern University, Evanston, Illinois, USA.
Neil L KelleherDepartment of Chemistry, Northwestern University, Evanston, Illinois, USA.
Dale DorsettDepartment of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, Missouri, USA.
Ali ShilatifardDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.ORCID http://orcid.org/0000-0002-7490-2854
Northwestern University · USSaint Louis University · USStowers Institute for Medical Research · US

Funding

TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Mutations of Chromatin and its Modifying Machineries in MalignanciesR35CA197569 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Ali Shilatifard · 2015 to 2026
$10.7M
CARCINOGENESIS TRAINING PROGRAMT32CA009560 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Kathleen Janee Green · 1986 to 2026
$8.4M
Cohesin Dynamics and Transcriptional Enhancer FunctionR01GM108714 · NIGMS · SAINT LOUIS UNIVERSITY · PI DORSETT, DALE L · 2015 to 2018
$1.2M
Histone Modification and Transcription Elongation in Human CancerR50CA211428 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SMITH, EDWIN R · 2016 to 2020
$925k
Trithorax-related, MLL3 and MLL4 in enhancer-mediated cancer pathogenesisR00CA181506 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HERZ, HANS-MARTIN · 2015 to 2017
$733k
Investigating catalytic and non-catalytic roles for Trr/COMPASS in regulating enhancer function during Drosophila developmentF31CA213928 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RICKELS, RYAN ADAM · 2017 to 2017
$28k
NCI NIH HHS F31 CA213928NCI NIH HHS R00 CA181506NCI NIH HHS R35 CA197569NCI NIH HHS R50 CA211428NCI NIH HHS T32 CA009560NIGMS NIH HHS P41 GM108569NIGMS NIH HHS R01 GM108714
6 · The paper itself

Abstract

Histone H3 lysine 4 monomethylation (H3K4me1) is an evolutionarily conserved feature of enhancer chromatin catalyzed by the COMPASS-like methyltransferase family, which includes Trr in Drosophila melanogaster and MLL3 (encoded by KMT2C) and MLL4 (encoded by KMT2D) in mammals. Here we demonstrate that Drosophila embryos expressing catalytically deficient Trr eclose and develop to productive adulthood. Parallel experiments with a trr allele that augments enzyme product specificity show that conversion of H3K4me1 at enhancers to H3K4me2 and H3K4me3 is also compatible with life and results in minimal changes in gene expression. Similarly, loss of the catalytic SET domains of MLL3 and MLL4 in mouse embryonic stem cells (mESCs) does not disrupt self-renewal. Drosophila embryos with trr alleles encoding catalytic mutants manifest subtle developmental abnormalities when subjected to temperature stress or altered cohesin levels. Collectively, our findings suggest that animal development can occur in the context of Trr or mammalian COMPASS-like proteins deficient in H3K4 monomethylation activity and point to a possible role for H3K4me1 on cis-regulatory elements in specific settings to fine-tune transcriptional regulation in response to environmental stress.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsBaculoviridaeChromatinCRISPR-Cas SystemsDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianHistone-Lysine N-MethyltransferaseHistonesLarvaMethylationMiceChromatinDNA-Binding ProteinsDrosophila ProteinsHistone-Lysine N-MethyltransferaseHistonesKmt2c protein, mouseMLL4 protein, mouseRecombinant ProteinsTRR protein, Drosophila

Identifiers

PMID28967912
PMCPMC5663216
OpenAlexW2761896392

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.