Evidence map›Paper›PMID 28967462›Full record

ArticleNeuromuscular disorders : NMD2017

Myophosphorylase (PYGM) mutations determined by next generation sequencing in a cohort from Turkey with McArdle disease.

Güldal Inal-Gültekin, Bahar Toptaş-Hekimoğlu, Zeliha Görmez, Özlem Gelişin, Hacer Durmuş, Bekir Ergüner, Hüseyin Demirci, Mahmut Ş Sağıroğlu, Yeşim Parman, Feza Deymeer and 9 more

Open access · greenAbstract read
In one paragraph

Article in Neuromuscular disorders : NMD, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
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  4. Update Review about Metabolic Myopathies.Life (Basel, Switzerland) · 2020
    Review
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  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Güldal Inal-GültekinDepartment of Molecular Medicine, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkey.
Bahar Toptaş-HekimoğluDepartment of Molecular Medicine, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkey.
Zeliha GörmezThe Scientific and Technological Research Council of Turkey (TUBITAK), Advanced Genomics and Bioinformatics Research Center (IGBAM), Kocaeli, Turkey.
Özlem GelişinDepartment of Neurology, Istanbul University, Istanbul Medical Faculty, Istanbul, Turkey.
Hacer DurmuşDepartment of Neurology, Istanbul University, Istanbul Medical Faculty, Istanbul, Turkey.
Bekir ErgünerThe Scientific and Technological Research Council of Turkey (TUBITAK), Advanced Genomics and Bioinformatics Research Center (IGBAM), Kocaeli, Turkey.
Hüseyin DemirciThe Scientific and Technological Research Council of Turkey (TUBITAK), Advanced Genomics and Bioinformatics Research Center (IGBAM), Kocaeli, Turkey.
Mahmut Ş SağıroğluThe Scientific and Technological Research Council of Turkey (TUBITAK), Advanced Genomics and Bioinformatics Research Center (IGBAM), Kocaeli, Turkey.
Yeşim ParmanDepartment of Neurology, Istanbul University, Istanbul Medical Faculty, Istanbul, Turkey.
Feza DeymeerDepartment of Neurology, Istanbul University, Istanbul Medical Faculty, Istanbul, Turkey.
Hülya Yılmaz-AydoğanDepartment of Molecular Medicine, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkey.
Sadrettin PençeDepartment of Molecular Medicine, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkey.
Can Ebru Bekircan-KurtDepartment of Neurology, Hacettepe University, School of Medicine, Ankara, Turkey.
Ersin TanDepartment of Neurology, Hacettepe University, School of Medicine, Ankara, Turkey.
Sevim Erdem-ÖzdamarDepartment of Neurology, Hacettepe University, School of Medicine, Ankara, Turkey.
Duran ÜstekDepartment of Genetics, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkey.
Urs GigerSection of Medical Genetics, University of Pennsylvania, Philadelphia, USA.
Oğuz ÖztürkDepartment of Molecular Medicine, Istanbul University, Aziz Sancar Institute of Experimental Medicine, Istanbul, Turkey.
Piraye Serdaroğlu-OflazerDepartment of Neurology, Istanbul University, Istanbul Medical Faculty, Istanbul, Turkey. Electronic address: pirayes@istanbul.edu.tr.
Istanbul University · TRScientific and Technological Research Council of Turkey · TRHacettepe University · TRUniversity of Pennsylvania · US

Funding

Referral Ctr-Animal models of human genetic diseaseP40OD010939 · OD · UNIVERSITY OF PENNSYLVANIA · PI CASAL, MARGRET L · 2012 to 2023
$7.9M
NIH HHS P40 OD010939
6 · The paper itself

Abstract

This study aimed to identify PYGM mutations in patients with McArdle disease from Turkey by next generation sequencing (NGS). Genomic DNA was extracted from the blood of the McArdle patients (n = 67) and unrelated healthy volunteers (n = 53). The PYGM gene was sequenced with NGS and the observed mutations were validated by direct Sanger sequencing. A diagnostic algorithm was developed for patients with suspected McArdle disease. A total of 16 deleterious PYGM mutations were identified, of which 5 were novel, including 1 splice-site donor, 1 frame-shift, and 3 non-synonymous variants. The p.Met1Val (27-patients/11-families) was the most common PYGM mutation, followed by p.Arg576* (6/4), c.1827+7A>G (5/4), c.772+2_3delTG (5/3), p.Phe710del (4/2), p.Lys754Asnfs (2/1), and p.Arg50* (1/1). A molecular diagnostic flowchart is proposed for the McArdle patients in Turkey, covering the 6 most common PYGM mutations found in Turkey as well as the most common mutation in Europe. The diagnostic algorithm may alleviate the need for muscle biopsies in 77.6% of future patients. A prevalence of any of the mutations to a geographical region in Turkey was not identified. Furthermore, the NGS approach to sequence the entire PYGM gene was successful in detecting a common missense mutation and discovering novel mutations in this population study.

Indexed as

Genetic TestingHigh-Throughput Nucleotide SequencingMutationAdolescentAdultAgedChildCohort StudiesFamilyFemaleGeography, MedicalGlycogen Phosphorylase, Muscle FormGlycogen Storage Disease Type VHumansMaleMiddle AgedGlycogen Phosphorylase, Muscle FormGenomicsGlycogenosisMolecular screeningNovel mutationPopulation specificRare muscle disorders

Identifiers

PMID28967462
PMCPMC5698850
OpenAlexW2626996599

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.