Evidence map›Paper›PMID 28967377›Full record

ArticleeLife2017

Intrinsic disorder within AKAP79 fine-tunes anchored phosphatase activity toward substrates and drug sensitivity.

Patrick J Nygren, Sohum Mehta, Devin K Schweppe, Lorene K Langeberg, Jennifer L Whiting, Chad R Weisbrod, James E Bruce, Jin Zhang, David Veesler, John D Scott

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A cellular atlas of calcineurin signaling.Biochimica et biophysica acta. Molecular cell research · 2023
    Review
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  11. Review
  12. Review
  13. Article
  14. Article
  15. Single nucleotide polymorphisms alter kinase anchoring and the subcellular targeting of A-kinase anchoring proteins.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Patrick J NygrenDepartment of Pharmacology, Howard Hughes Medical Institute, University of Washington, Seattle, United States.ORCID http://orcid.org/0000-0001-8688-9389
Sohum MehtaDepartment of Pharmacology, University of California, San Diego, San Diego, United States.
Devin K SchweppeDepartment of Genome Sciences, University of Washington, Seattle, United States.
Lorene K LangebergDepartment of Pharmacology, Howard Hughes Medical Institute, University of Washington, Seattle, United States.ORCID http://orcid.org/0000-0002-3760-7813
Jennifer L WhitingDepartment of Pharmacology, Howard Hughes Medical Institute, University of Washington, Seattle, United States.
Chad R WeisbrodNational High Magnetic Field Laboratory, Florida State University, Tallahassee, United States.
James E BruceDepartment of Genome Sciences, University of Washington, Seattle, United States.
Jin ZhangDepartment of Pharmacology, University of California, San Diego, San Diego, United States.ORCID http://orcid.org/0000-0001-7145-7823
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, United States.
John D ScottDepartment of Pharmacology, Howard Hughes Medical Institute, University of Washington, Seattle, United States.ORCID http://orcid.org/0000-0002-0367-8146
Howard Hughes Medical Institute · USUniversity of Washington · USUniversity of California San Diego · USFlorida State University · US

Funding

Project# 4: INTERACTIONS OF ANCHORING PROTEINS WITH THEIR TARGETSP01DK054441 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAYLOR, SUSAN S. · 1999 to 2017
$27.3M
Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
Mechanisms of Compartmentalized cAMP SignalingR01DK073368 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jin Zhang · 2006 to 2026
$7.6M
Quantitation of protein interactions in cancer cellsR01GM086688 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2009 to 2019
$4.2M
Structural Studies of Coronavirus Fusion ProteinsR01GM120553 · NIGMS · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2016 to 2020
$1.7M
Local Signaling in Diabetic ComorbiditiesR01DK105542 · NIDDK · UNIVERSITY OF WASHINGTON · PI SCOTT, JOHN D · 2015 to 2018
$1.4M
Howard Hughes Medical InstituteNIDDK NIH HHS P01 DK054441NIDDK NIH HHS R01 DK073368NIDDK NIH HHS R01 DK105542NIGMS NIH HHS R01 GM086688NIGMS NIH HHS R01 GM120553
6 · The paper itself

Abstract

Scaffolding the calcium/calmodulin-dependent phosphatase 2B (PP2B, calcineurin) focuses and insulates termination of local second messenger responses. Conformational flexibility in regions of intrinsic disorder within A-kinase anchoring protein 79 (AKAP79) delineates PP2B access to phosphoproteins. Structural analysis by negative-stain electron microscopy (EM) reveals an ensemble of dormant AKAP79-PP2B configurations varying in particle length from 160 to 240 Å. A short-linear interaction motif between residues 337-343 of AKAP79 is the sole PP2B-anchoring determinant sustaining these diverse topologies. Activation with Ca2

Indexed as

A Kinase Anchor ProteinsCalcineurinCalciumCalmodulinHumansMicroscopy, ElectronProtein BindingProtein ConformationProtein Interaction MapsAKAP5 protein, humanA Kinase Anchor ProteinsCalcineurinCalciumCalmodulinAKAP79anchoring proteinsbiochemistrycalcineurin/PP2Bcalcium signalingintrinsic disordershort linear motifs

Identifiers

PMID28967377
PMCPMC5653234
OpenAlexW2757753403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.