Evidence map›Paper›PMID 28966547›Full record

ArticleMolecular vision2017

Diagnostic application of clinical exome sequencing in Leber congenital amaurosis.

Jinu Han, John Hoon Rim, In Sik Hwang, Jieun Kim, Saeam Shin, Seung-Tae Lee, Jong Rak Choi

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jinu HanDepartment of Ophthalmology, Severance Hospital, Institute of Vision Research, Yonsei University College of Medicine, Seoul, Korea.
John Hoon RimDepartment of Laboratory Medicine, Severance Hospital, Yonsei University College of Medicine, Seoul, Korea.
In Sik HwangBrain Korea 21 PLUS Project for Medical Science, Yonsei University College of Medicine, Seoul, Korea.
Jieun KimDepartment of Laboratory Medicine, Severance Hospital, Yonsei University College of Medicine, Seoul, Korea.
Saeam ShinDepartment of Laboratory Medicine, Severance Hospital, Yonsei University College of Medicine, Seoul, Korea.
Seung-Tae LeeDepartment of Laboratory Medicine, Severance Hospital, Yonsei University College of Medicine, Seoul, Korea.
Jong Rak ChoiDepartment of Laboratory Medicine, Severance Hospital, Yonsei University College of Medicine, Seoul, Korea.
Yonsei University · KRSeverance Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeLeber congenital amaurosis (LCA) is a hereditary retinal dystrophy with wide genetic heterogeneity. Next-generation sequencing (NGS) targeting multiple genes can be a good option for the diagnosis of LCA, and we tested a clinical exome panel in patients with LCA.

methodsA total of nine unrelated Korean patients with LCA were sequenced using the Illumina TruSight One panel, which targets 4,813 clinically associated genes, followed by confirmation using Sanger sequencing. Patients' clinical information and familial study results were obtained and used for comprehensive interpretation.

resultsIn all nine patients, we identified pathogenic variations in LCA-associated genes:

conclusionsWe confirmed that a commercial clinical exome panel can be effectively used in the diagnosis of LCA. Careful interpretation and clinical correlation could promote the successful implementation of clinical exome panels in routine diagnoses of retinal dystrophies, including LCA.

Indexed as

Sequence Analysis, DNAAdultAntigens, NeoplasmCell Cycle ProteinsCytoskeletal ProteinsDNA-Binding ProteinsDNA Mutational AnalysisExomeEye ProteinsFemaleGenetic Association StudiesGuanylate CyclaseHigh-Throughput Nucleotide SequencingHomeodomain ProteinsHumansInfantAntigens, NeoplasmCell Cycle ProteinsCep290 protein, humancone rod homeobox proteinCytoskeletal ProteinsDNA-Binding ProteinsEye ProteinsGuanylate Cyclaseguanylate cyclase 1Homeodomain ProteinsNeoplasm ProteinsNicotinamide-Nucleotide AdenylyltransferaseNMNAT1 protein, humanProteinsReceptors, Cell SurfaceRPGRIP1 protein, humanSPATA7 protein, humanTrans-Activators

Identifiers

PMID28966547
PMCPMC5610811
OpenAlexW2914733757

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.