Evidence map›Paper›PMID 28965848›Full record

ArticleAmerican journal of human genetics2017

Nested Inversion Polymorphisms Predispose Chromosome 22q11.2 to Meiotic Rearrangements.

Wolfram Demaerel, Matthew S Hestand, Elfi Vergaelen, Ann Swillen, Marcos López-Sánchez, Luis A Pérez-Jurado, Donna M McDonald-McGinn, Elaine Zackai, Beverly S Emanuel, Bernice E Morrow and 4 more

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Retraction · 2018-09-06Error in Analyses · Bias Issues or Lack of Balance · · The following authors were listed as part of the Consortium: Kevin Antshel, Celso Arango, Marco Armando,Anne Bassett, Carrie Bearden, Erik Boot, Marta Bravo-Sanchez,Elemi Breetvelt, Tiffany Busa, Nancy Butcher, Linda Campbell,Miri Carmel, Eva Chow, T. Blaine Crowley, Joseph Cubells, DavidCutler, Wolfram Demaerel, Maria Cristina Digilio, Sasja Duijff, Ste-phan Eliez, Beverly Emanuel, Michael Epstein, Rens Evers, LuisFernandez Garcia-Moya, Ania Fiksinski, David Fraguas, Wanda Fre-mont, Rosemarie Fritsch, Sixto Garcia-Minaur, Aaron Golden,Doron Gothelf, Tingwei Guo, Ruben Gur, Raquel Gur, DamianHeine-Suner, Matthew Hestand, Stephen Hooper, Wendy Kates,Leila Kushan, Alejandra Laorden-Nieto, Johanna Maeder, BrunoMarino, Christian Marshall, Kathryn McCabe, Donna McDo-nald-McGinn, Elena Michaelovosky, Bernice Morrow, EdwardMoss, Jennifer Mulle, Declan Murphy, Kieran Murphy, ClodaghMurphy, Maria Niarchou, Claudia Ornstein, Michael Owen,Nicole Philip, Gabriela Repetto, Maude Schneider, VandanaShashi, Tony Simon, Ann Swillen, Flora Tassone, Marta Unolt,Therese van Amelsvoort, Marianne van den Bree, Esther VanDuin, El? Vergaelen, Joris Vermeesch, Stefano Vicari, ClaudiaVingerhoets, Jacob Vorstman, Steve Warren, Ronnie Weinberger,Omri Weisman, Abraham Weizman, Elaine Zackai, Zhengdong Zhang, and Michael Zwick
  • Retracted
5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

Wolfram DemaerelDepartment of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Matthew S HestandDepartment of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Elfi VergaelenDepartment of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Ann SwillenDepartment of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Marcos López-SánchezDepartament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona, Spain; Institut Hospital del Mar d'Investigacions Mèdiques, Barcelona, Spain; Centro de Investigación Biomédica en Red de Enfermedades Raras, Barcelona, Spain.
Luis A Pérez-JuradoDepartament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, Barcelona, Spain; Institut Hospital del Mar d'Investigacions Mèdiques, Barcelona, Spain; Centro de Investigación Biomédica en Red de Enfermedades Raras, Barcelona, Spain.
Donna M McDonald-McGinnDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, USA; Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Elaine ZackaiDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, USA; Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Beverly S EmanuelDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, USA; Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Bernice E MorrowDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY, USA.
Jeroen BreckpotDepartment of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Koenraad DevriendtDepartment of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Joris R VermeeschDepartment of Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium. Electronic address: joris.vermeesch@kuleuven.be.
International 22q11.2 Brain and Behavior Consortium
KU Leuven · BEAlbert Einstein College of Medicine · US

Funding

3/5 International Consortium on Brain and Behavior in 22q11.2 Deletion SyndromeU01MH101723 · NIMH · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI BASSETT, ANNE S., CHOW, EVA W. C. · 2013 to 2016
$821k
Medical Research Council MR/N026063/1NIMH NIH HHS U01 MH101723
6 · The paper itself

Abstract

Inversion polymorphisms between low-copy repeats (LCRs) might predispose chromosomes to meiotic non-allelic homologous recombination (NAHR) events and thus lead to genomic disorders. However, for the 22q11.2 deletion syndrome (22q11.2DS), the most common genomic disorder, no such inversions have been uncovered as of yet. Using fiber-FISH, we demonstrate that parents transmitting the de novo 3 Mb LCR22A-D 22q11.2 deletion, the reciprocal duplication, and the smaller 1.5 Mb LCR22A-B 22q11.2 deletion carry inversions of LCR22B-D or LCR22C-D. Hence, the inversions predispose chromosome 22q11.2 to meiotic rearrangements and increase the individual risk for transmitting rearrangements. Interestingly, the inversions are nested or flanking rather than coinciding with the deletion or duplication sizes. This finding raises the possibility that inversions are a prerequisite not only for 22q11.2 rearrangements but also for all NAHR-mediated genomic disorders.

Indexed as

Chromosome InversionGenetic Predisposition to DiseaseMeiosisPolymorphism, Single NucleotideChromosome DeletionDiGeorge SyndromeDNA Copy Number VariationsHomologous RecombinationHumansIn Situ Hybridization, Fluorescence22q11.2 deletion syndrome22q11.2DSDiGeorge syndromefiber-FISHGenomic disorderinversion polymorphismlow-copy repeatsmicrodeletionsegmental duplicationsVCFS

Identifiers

PMID28965848
PMCPMC5630191
OpenAlexW2758928422

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.