Evidence map›Paper›PMID 28965847›Full record

ArticleAmerican journal of human genetics2017

Hypomorphic Recessive Variants in SUFU Impair the Sonic Hedgehog Pathway and Cause Joubert Syndrome with Cranio-facial and Skeletal Defects.

Roberta De Mori, Marta Romani, Stefano D'Arrigo, Maha S Zaki, Elisa Lorefice, Silvia Tardivo, Tommaso Biagini, Valentina Stanley, Damir Musaev, Joel Fluss and 20 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Ciliary-Mediated Mechanotransduction in Skeletal Development and Diseases.Results and problems in cell differentiation · 2026
    Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Review
  9. MYCN in human development and diseases.Frontiers in oncology · 2024
    Review
  10. Article
  11. RecessiveJournal of personalized medicine · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Journal of medical genetics · 2022
    Article
  16. The Joubert-Meckel-Nephronophthisis Spectrum of Ciliopathies.Annual review of genomics and human genetics · 2022
    Review
  17. Review
  18. Primary cilia in satellite cells are the mechanical sensors for muscle hypertrophy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Review
  20. Genotype-phenotype correlates in Joubert syndrome: A review.American journal of medical genetics. Part C, Seminars in medical genetics · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 15 institutions in 5 countries.

Roberta De MoriNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy; Department of Biological and Environmental Sciences, University of Messina, Messina 98125, Italy.
Marta RomaniMolecular Genetics Laboratory, GENOMA Group, Rome 00138, Italy.
Stefano D'ArrigoDevelopmental Neurology Division, Foundation IRCCS Neurological Institute Carlo Besta, Milan 20133, Italy.
Maha S ZakiClinical Genetics Department, Human Genetics and Genome Research Division, National Research Centre, Cairo 12311, Egypt.
Elisa LoreficeNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy.
Silvia TardivoNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy.
Tommaso BiaginiIRCCS Casa Sollievo della Sofferenza, Laboratory of Bioinformatics, San Giovanni Rotondo (FG) 71013, Italy.
Valentina StanleyLaboratory for Pediatric Brain Diseases, Rady Children's Institute for Genomic Medicine, University of California, San Diego, Howard Hughes Medical Institute, La Jolla, CA 92037, USA.
Damir MusaevLaboratory for Pediatric Brain Diseases, Rady Children's Institute for Genomic Medicine, University of California, San Diego, Howard Hughes Medical Institute, La Jolla, CA 92037, USA.
Joel FlussPediatric Neurology Unit, Geneva Children's Hospital, 1211 Genève 4, Switzerland.
Alessia MicalizziNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy; Department of Biological and Environmental Sciences, University of Messina, Messina 98125, Italy.
Sara NuovoNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy; Department of Medicine and Surgery, University of Salerno, Salerno 84081, Italy.
Barbara IlliInstitute of Molecular Biology and Pathology, National Research Council, Rome 00185, Italy.
Luisa ChiappariniNeuroradiology Department, Foundation IRCCS Neurological Institute Carlo Besta, Milan 20133, Italy.
Lucia Di MarcotullioDepartment of Molecular Medicine and Istituto Pasteur Fondazione Cenci Bolognetti, Sapienza University, Rome 00161, Italy.
Mahmoud Y IssaClinical Genetics Department, Human Genetics and Genome Research Division, National Research Centre, Cairo 12311, Egypt.
Danila AnelloNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy.
Antonella CasellaNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy.
Monia GinevrinoNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy; Department of Molecular Medicine, University of Pavia, Pavia 27100, Italy.
Autumn Sa'na LegginsLaboratory for Pediatric Brain Diseases, Rady Children's Institute for Genomic Medicine, University of California, San Diego, Howard Hughes Medical Institute, La Jolla, CA 92037, USA.
Susanne RoosingDepartment of Human Genetics, Radboud University Medical Center, Nijmegen 6525 GA, the Netherlands.
Romina AlfonsiDepartment of Molecular Medicine and Istituto Pasteur Fondazione Cenci Bolognetti, Sapienza University, Rome 00161, Italy.
Jessica RosatiIRCCS Casa Sollievo della Sofferenza, Laboratory of Cellular Reprogramming, San Giovanni Rotondo (FG) 71013, Italy.
Rachel SchotDepartment of Clinical Genetics, Erasmus Medical Center, Rotterdam 3015 CN, the Netherlands.
Grazia Maria Simonetta ManciniDepartment of Clinical Genetics, Erasmus Medical Center, Rotterdam 3015 CN, the Netherlands.
Enrico BertiniLaboratory of Molecular Medicine, Unit of Neuromuscular and NeuroDegenerative Disorders, Department of Neurosciences, Bambino Gesù Children's Hospital IRCCS, Rome 00146, Italy.
William B DobynsDepartments of Pediatrics and Neurology, University of Washington, Seattle, WA 98101, USA; Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Tommaso MazzaIRCCS Casa Sollievo della Sofferenza, Laboratory of Bioinformatics, San Giovanni Rotondo (FG) 71013, Italy.
Joseph G GleesonLaboratory for Pediatric Brain Diseases, Rady Children's Institute for Genomic Medicine, University of California, San Diego, Howard Hughes Medical Institute, La Jolla, CA 92037, USA.
Enza Maria ValenteNeurogenetics Unit, IRCCS Santa Lucia Foundation, Rome 00143, Italy; Department of Molecular Medicine, University of Pavia, Pavia 27100, Italy. Electronic address: em.valente@hsantalucia.it.
Children’s Institute · USFondazione Santa Lucia · ITCasa Sollievo della Sofferenza · ITErasmus MC · NLFondazione IRCCS Istituto Neurologico Carlo Besta · ITIstituto Pasteur · ITNational Research Centre · EGUniversity of Messina · ITUniversity of Pavia · ITBambino Gesù Children's Hospital · ITInstitute of Molecular Biology and Pathology · ITRadboud University Nijmegen · NLUniversity Hospital of Geneva · CHUniversity of Salerno · ITUniversity of Washington · US

Funding

The Genetic Basis of Mid-Hindbrain MalformationsR01NS050375 · NINDS · UNIVERSITY OF MINNESOTA · PI DOBYNS, WILLIAM B. · 2005 to 2019
$9.9M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Project 3. Genetic Models of Human Structural Brain Defects in ZebrafishP01HD070494 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G · 2011 to 2016
$6.7M
Molecular Characterization of Joubert SyndromeR01NS048453 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G · 2004 to 2020
$6.0M
European Research Council 260888NICHD NIH HHS P01 HD070494NINDS NIH HHS P30 NS047101NINDS NIH HHS R01 NS048453NINDS NIH HHS R01 NS050375
6 · The paper itself

Abstract

The Sonic Hedgehog (SHH) pathway is a key signaling pathway orchestrating embryonic development, mainly of the CNS and limbs. In vertebrates, SHH signaling is mediated by the primary cilium, and genetic defects affecting either SHH pathway members or ciliary proteins cause a spectrum of developmental disorders. SUFU is the main negative regulator of the SHH pathway and is essential during development. Indeed, Sufu knock-out is lethal in mice, and recessive pathogenic variants of this gene have never been reported in humans. Through whole-exome sequencing in subjects with Joubert syndrome, we identified four children from two unrelated families carrying homozygous missense variants in SUFU. The children presented congenital ataxia and cerebellar vermis hypoplasia with elongated superior cerebellar peduncles (mild "molar tooth sign"), typical cranio-facial dysmorphisms (hypertelorism, depressed nasal bridge, frontal bossing), and postaxial polydactyly. Two siblings also showed polymicrogyria. Molecular dynamics simulation predicted random movements of the mutated residues, with loss of the native enveloping movement of the binding site around its ligand GLI3. Functional studies on cellular models and fibroblasts showed that both variants significantly reduced SUFU stability and its capacity to bind GLI3 and promote its cleavage into the repressor form GLI3R. In turn, this impaired SUFU-mediated repression of the SHH pathway, as shown by altered expression levels of several target genes. We demonstrate that germline hypomorphic variants of SUFU cause deregulation of SHH signaling, resulting in recessive developmental defects of the CNS and limbs which share features with both SHH-related disorders and ciliopathies.

Indexed as

Genes, RecessiveMutation, MissenseAbnormalities, MultipleBone Diseases, DevelopmentalCells, CulturedCerebellumChildCohort StudiesCraniofacial AbnormalitiesEye AbnormalitiesFemaleFibroblastsGene Expression Regulation, DevelopmentalHedgehog ProteinsHumansKidney Diseases, CysticGLI3 protein, humanHedgehog ProteinsKruppel-Like Transcription FactorsNerve Tissue ProteinsRepressor ProteinsSHH protein, humanSUFU protein, humanZinc Finger Protein Gli3ciliopathiescongenital ataxiadevelopmental defectsGLI3hypomorphic variantsJoubert syndromemolar tooth signpolymicrogyriaSonic HedgehogSUFU

Identifiers

PMID28965847
PMCPMC5630196
OpenAlexW2758541575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.