Evidence map›Paper›PMID 28965760›Full record

ArticleCell2017

Chemical Proteomics Identifies Druggable Vulnerabilities in a Genetically Defined Cancer.

Liron Bar-Peled, Esther K Kemper, Radu M Suciu, Ekaterina V Vinogradova, Keriann M Backus, Benjamin D Horning, Thomas A Paul, Taka-Aki Ichu, Robert U Svensson, Jose Olucha and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 164 papers.

0numbers the graph read from it
0cells of the map it votes in
164citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

164 citing papers in PubMed, 283 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Targeting extrachromosomal DNA in human cancers.Nature reviews. Drug discovery · 2026
    Review
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  11. Review
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  13. Review
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  15. Article
  16. Review
  17. Article
  18. Cysteine reactivity profiling identifies host regulators ofbioRxiv : the preprint server for biology · 2025
    Article
  19. Article
  20. Article

104 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 1 country.

Liron Bar-PeledThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: lironbp@scripps.edu.
Esther K KemperThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Radu M SuciuThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Ekaterina V VinogradovaThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Keriann M BackusThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Benjamin D HorningThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Thomas A PaulOncology Research Unit, Pfizer Worldwide Research and Development, La Jolla, CA 92121, USA.
Taka-Aki IchuThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Robert U SvenssonMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Jose OluchaThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Max W ChangDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Bernard P KokThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Zhou ZhuOncology Research Unit, Pfizer Worldwide Research and Development, La Jolla, CA 92121, USA.
Nathan T IhleOncology Research Unit, Pfizer Worldwide Research and Development, La Jolla, CA 92121, USA.
Melissa M DixThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Ping JiangOncology Research Unit, Pfizer Worldwide Research and Development, La Jolla, CA 92121, USA.
Matthew M HaywardOncology Research Unit, Pfizer Worldwide Research and Development, La Jolla, CA 92121, USA.
Enrique SaezThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Reuben J ShawMolecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Benjamin F CravattThe Skaggs Institute for Chemical Biology and Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: cravatt@scripps.edu.
Scripps Research Institute · USPfizer (United States) · USSalk Institute for Biological Studies · USUniversity of California, San Diego · US

Funding

Decoding And Targeting The LKB1-AMPK Signaling Pathway In CancerR35CA220538 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 2017 to 2026
$11.3M
Chemical Probes for Metabolic Pathway Discovery in Human DiseaseR01CA132630 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2007 to 2018
$5.1M
Chemical Approaches for Activity-Based ProteomicsR37CA087660 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2009 to 2018
$3.1M
CHEMICAL APPROACHES FOR ACTIVITY BASED PROTEOMICSR01CA087660 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2000 to 2008
$2.8M
AMPK and AMPK-related kinases in lung cancer development and treatmentR01CA172229 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHAW, REUBEN · 2013 to 2017
$2.0M
Application of (chemo)proteomic methods to map cancer biochemical pathwaysR50CA211526 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI SIMON, MELISSA DIX · 2016 to 2020
$843k
Mapping druggable co-dependency pathways in NRF2-driven lung cancersR00CA215249 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI BAR-PELED, LIRON · 2019 to 2021
$727k
Mapping druggable co-dependency pathways in NRF2-driven lung cancersK99CA215249 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI BAR-PELED, LIRON · 2017 to 2018
$230k
Seahorse XF96 Extracellular Flux AnalyzerS10OD016357 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI SAEZ, ENRIQUE · 2013 to 2013
$175k
NCI NIH HHS K99 CA215249NCI NIH HHS R00 CA215249NCI NIH HHS R01 CA087660NCI NIH HHS R01 CA132630NCI NIH HHS R01 CA172229NCI NIH HHS R35 CA220538NCI NIH HHS R37 CA087660NCI NIH HHS R50 CA211526NIH HHS S10 OD016357
6 · The paper itself

Abstract

The transcription factor NRF2 is a master regulator of the cellular antioxidant response, and it is often genetically activated in non-small-cell lung cancers (NSCLCs) by, for instance, mutations in the negative regulator KEAP1. While direct pharmacological inhibition of NRF2 has proven challenging, its aberrant activation rewires biochemical networks in cancer cells that may create special vulnerabilities. Here, we use chemical proteomics to map druggable proteins that are selectively expressed in KEAP1-mutant NSCLC cells. Principal among these is NR0B1, an atypical orphan nuclear receptor that we show engages in a multimeric protein complex to regulate the transcriptional output of KEAP1-mutant NSCLC cells. We further identify small molecules that covalently target a conserved cysteine within the NR0B1 protein interaction domain, and we demonstrate that these compounds disrupt NR0B1 complexes and impair the anchorage-independent growth of KEAP1-mutant cancer cells. Our findings designate NR0B1 as a druggable transcriptional regulator that supports NRF2-dependent lung cancers.

Indexed as

TranscriptomeCarcinoma, Non-Small-Cell LungCell Line, TumorCysteineDAX-1 Orphan Nuclear ReceptorGene Regulatory NetworksHumansKelch-Like ECH-Associated Protein 1LigandsLung NeoplasmsProteomeCysteineDAX-1 Orphan Nuclear ReceptorKEAP1 protein, humanKelch-Like ECH-Associated Protein 1LigandsNR0B1 protein, humanProteomeactivity-based profilingchemical proteomicscovalentfragmentKEAP1lung cancermass spectrometryNR0B1NRF2

Identifiers

PMID28965760
PMCPMC5728659
OpenAlexW2757007104

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.