Evidence map›Paper›PMID 28965402›Full record

ArticleACS infectious diseases2017

Clinical Variants of New Delhi Metallo-β-Lactamase Are Evolving To Overcome Zinc Scarcity.

Alesha C Stewart, Christopher R Bethel, Jamie VanPelt, Alex Bergstrom, Zishuo Cheng, Callie G Miller, Cameron Williams, Robert Poth, Matthew Morris, Olivia Lahey and 6 more

Open access · greenAbstract read
In one paragraph

Article in ACS infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
  2. Characteristics ofOne health (Amsterdam, Netherlands) · 2026
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  12. Structural role of K224 in taniborbactam inhibition of NDM-1.Antimicrobial agents and chemotherapy · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Alesha C StewartDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and the LaMontagne Center for Infectious Disease, University of Texas , Austin, Texas 78712, United States.
Christopher R BethelResearch Services, Louis Stokes Cleveland Department of Veterans Affairs Medical Center , Cleveland, Ohio 44106, United States.
Jamie VanPeltDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Alex BergstromDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Zishuo ChengDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Callie G MillerDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Cameron WilliamsDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Robert PothDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Matthew MorrisDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Olivia LaheyDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Jay C NixMolecular Biology Consortium, Beamline 4.2.2, Advanced Light Source, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States.
David L TierneyDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.
Richard C PageDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.ORCID 0000-0002-3006-3171
Michael W CrowderDepartment of Chemistry and Biochemistry, Miami University , Oxford, Ohio 45056, United States.ORCID 0000-0002-3138-0283
Robert A BonomoResearch Services, Louis Stokes Cleveland Department of Veterans Affairs Medical Center , Cleveland, Ohio 44106, United States.ORCID 0000-0002-3299-894X
Walter FastDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and the LaMontagne Center for Infectious Disease, University of Texas , Austin, Texas 78712, United States.ORCID 0000-0001-7567-2213
Miami University · USAustin College · USCleveland FES Center · USLawrence Berkeley National Laboratory · USLouis Stokes Cleveland VA Medical Center · US

Funding

Understanding B-Lactam Resistance in Acinetobacter baumanniiR01AI072219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ROBERT A. BONOMO, Philip N. Rather · 2007 to 2026
$6.6M
Understanding ceftazidime resistance in SHV B-LactamasesR01AI063517 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A. · 2005 to 2023
$4.9M
A Mechanism-Based Approach to Metallo-beta-Lactamase InhibitionR01AI100560 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A., SPENCER, JAMES · 2012 to 2022
$4.4M
Developing Metallo-Beta-Lactamase InhibitorsR01GM111926 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BONOMO, ROBERT A., COHEN, SETH M · 2015 to 2019
$2.3M
The Continuing Challenge of Carbapenemases in K. pneumoniae: KPC-2 & NDM-1I01BX001974 · VA · LOUIS STOKES CLEVELAND VA MEDICAL CENTER · PI BONOMO, ROBERT A. · 2013 to 2024
–
BLRD VA I01 BX001974NIAID NIH HHS R01 AI063517NIAID NIH HHS R01 AI072219NIAID NIH HHS R01 AI100560NIGMS NIH HHS R01 GM111926
6 · The paper itself

Abstract

Use and misuse of antibiotics have driven the evolution of serine β-lactamases to better recognize new generations of β-lactam drugs, but the selective pressures driving evolution of metallo-β-lactamases are less clear. Here, we present evidence that New Delhi metallo-β-lactamase (NDM) is evolving to overcome the selective pressure of zinc(II) scarcity. Studies of NDM-1, NDM-4 (M154L), and NDM-12 (M154L, G222D) demonstrate that the point mutant M154L, contained in 50% of clinical NDM variants, selectively enhances resistance to the penam ampicillin at low zinc(II) concentrations relevant to infection sites. Each of the clinical variants is shown to be progressively more thermostable and to bind zinc(II) more tightly than NDM-1, but a selective enhancement of penam turnover at low zinc(II) concentrations indicates that most of the improvement derives from catalysis rather than stability. X-ray crystallography of NDM-4 and NDM-12, as well as bioinorganic spectroscopy of dizinc(II), zinc(II)/cobalt(II), and dicobalt(II) metalloforms probe the mechanism of enhanced resistance and reveal perturbations of the dinuclear metal cluster that underlie improved catalysis. These studies support the proposal that zinc(II) scarcity, rather than changes in antibiotic structure, is driving the evolution of new NDM variants in clinical settings.

Indexed as

beta-LactamasesCrystallography, X-RayEnzyme StabilityHumansMicrobial Sensitivity TestsZincbeta-lactamase NDM-1beta-LactamasesZincantibiotic resistanceevolutionnutritional immunityzincβ-lactamase

Identifiers

PMID28965402
PMCPMC5726261
OpenAlexW2756513577

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.