Evidence map›Paper›PMID 28964698›Full record

ArticleCell systems2017

Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow.

Olga Ponomarova, Natalia Gabrielli, Daniel C Sévin, Michael Mülleder, Katharina Zirngibl, Katsiaryna Bulyha, Sergej Andrejev, Eleni Kafkia, Athanasios Typas, Uwe Sauer and 2 more

Abstract read
In one paragraph

Article in Cell systems, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 164 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
164citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

164 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Contribution ofFrontiers in cellular and infection microbiology · 2021
    Pooled it
  2. Review
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  11. In vitro characterization of probiotic properties of isolated and grown co-cultures on halophyte-based substrate.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  12. Article
  13. Article
  14. Hypersensitivity of chitin degradation to initial species densities due to monomer diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. Article
  16. Review
  17. From fruit waste to foods via fermentation.Current research in food science · 2026
    Review
  18. Article
  19. Article
  20. Article

104 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Olga PonomarovaEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany.
Natalia GabrielliEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany.
Daniel C SévinInstitute of Molecular Systems Biology, ETH-Zürich, Zürich 8093, Switzerland.
Michael MüllederDepartment of Biochemistry, University of Cambridge, The Francis Crick Institute, London, NW1 1AT, UK.
Katharina ZirngiblEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany.
Katsiaryna BulyhaEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany.
Sergej AndrejevEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany.
Eleni KafkiaEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany.
Athanasios TypasEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany.
Uwe SauerInstitute of Molecular Systems Biology, ETH-Zürich, Zürich 8093, Switzerland.
Markus RalserDepartment of Biochemistry, University of Cambridge, The Francis Crick Institute, London, NW1 1AT, UK.
Kiran Raosaheb PatilEuropean Molecular Biology Laboratory, Heidelberg 69117, Germany. Electronic address: patil@embl.de.

Funding

Cancer Research UK FC001134Medical Research Council FC001134Wellcome Trust 200829/Z/16/ZWellcome Trust FC001134
6 · The paper itself

Abstract

Many microorganisms live in communities and depend on metabolites secreted by fellow community members for survival. Yet our knowledge of interspecies metabolic dependencies is limited to few communities with small number of exchanged metabolites, and even less is known about cellular regulation facilitating metabolic exchange. Here we show how yeast enables growth of lactic acid bacteria through endogenous, multi-component, cross-feeding in a readily established community. In nitrogen-rich environments, Saccharomyces cerevisiae adjusts its metabolism by secreting a pool of metabolites, especially amino acids, and thereby enables survival of Lactobacillus plantarum and Lactococcus lactis. Quantity of the available nitrogen sources and the status of nitrogen catabolite repression pathways jointly modulate this niche creation. We demonstrate how nitrogen overflow by yeast benefits L. plantarum in grape juice, and contributes to emergence of mutualism with L. lactis in a medium with lactose. Our results illustrate how metabolic decisions of an individual species can benefit others.

Indexed as

FermentationLactic AcidLactiplantibacillus plantarumLactobacillalesLactococcus lactisNitrogenSaccharomyces cerevisiaeSymbiosisYeast, DriedLactic AcidNitrogencross-feedingmetabolic interactionsmetabolomicsmicrobial communitiesmutualismTORC1

Identifiers

PMID28964698
PMCPMC5660601

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.