Evidence map›Paper›PMID 28964256›Full record

ArticleMolecular cancer2017

A novel mechanism of lncRNA and miRNA interaction: CCAT2 regulates miR-145 expression by suppressing its maturation process in colon cancer cells.

Yingjie Yu, Pratima Nangia-Makker, Lulu Farhana, Adhip P N Majumdar

Open access · goldAbstract read
In one paragraph

Article in Molecular cancer, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
7.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 202 citations in OpenAlex.

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  16. CRISPR/Cas9: a powerful tool in colorectal cancer research.Journal of experimental & clinical cancer research : CR · 2023
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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yingjie YuDepartment of Veterans Affairs Medical Center, 4646 John R, Detroit, MI, 48201, USA. aa5142@wayne.edu.
Pratima Nangia-MakkerDepartment of Veterans Affairs Medical Center, 4646 John R, Detroit, MI, 48201, USA.
Lulu FarhanaDepartment of Veterans Affairs Medical Center, 4646 John R, Detroit, MI, 48201, USA.
Adhip P N MajumdarDepartment of Veterans Affairs Medical Center, 4646 John R, Detroit, MI, 48201, USA. a.majumdar@wayne.edu.
Wayne State University · USThe Barbara Ann Karmanos Cancer Institute · US

Funding

Racial Disparity in Colorectal Cancer: Molecular MechanismsR21CA175916 · NCI · WAYNE STATE UNIVERSITY · PI MAJUMDAR, ADHIP P. N. · 2013 to 2014
$297k
Differentiation and Elimination of Chemo-surviving Colon TumorsI01BX001927 · VA · JOHN D DINGELL VA MEDICAL CENTER · PI MAJUMDAR, ADHIP P. N. · 2013 to 2016
–
BLRD VA I01 BX001927NCI NIH HHS R21 CA175916
6 · The paper itself

Abstract

backgroundAlthough both long and micro RNAs are emerging as important functional components in colorectal cancer (CRC) progression and metastasis, the mechanism of their interaction remains poorly understood. CCAT2 (Colon cancer-associated transcript-2), a long noncoding RNA (lncRNA), has been reported to be over-expressed in CRC and is found to promote tumor growth. miRNAs, a class of naturally occurring short RNAs negatively control the expression of target genes by cleaving mRNA or through translation repression. Recently, we reported that miR-145 and miR-21 cooperate to regulate colon cancer stem cell (CSC) proliferation and differentiation. Considering that CCAT2 is mainly located in the nucleus and miRNA maturation process begins in the nucleus, we hypothesize that CCAT2 selectively blocks miR-145 maturation process, resulting in decreased mature miR-145 affecting colon CSC proliferation and differentiation.

methodsThe levels of CCAT2 were manipulated by transfection of CCAT2 expression plasmid or knockdown by siRNA or by CRISPR/Cas9. Quantitative RT-PCR was performed to examine the expression of CCAT2 and pri-, pre- and mature miR-145/21. Fluorescence in situ hybridization (FISH) was used to visualize CCAT2 in the cells. In vitro processing of pri-miRNA-145 was performed using T7 RNA polymerase and recombinant human Dicer.

resultsWe have observed that modulated expression of CCAT2 regulates the expression of miR-145 in colon cancer HCT-116 and HT-29 cells. Knockout of CCAT2 increases miR-145 and negatively regulates miR-21 in HCT-116 cells, impairs proliferation and differentiation. In contrast, stable up-regulation of CCAT2 decreases mature miR-145 and increases the expression of several CSC markers in colon cancer cells. We have also observed that CCAT2 is enriched in the nucleus and correlates with the expression of pre-miR-145 but not pre-miR-21 in HCT-116 cells. These results indicate CCAT2 selectively blocks miR-145 maturation by inhibiting pre-miR-145 export to cytoplasm. Further, we revealed that CCAT2 blocks cleavage of pre-miR-145 by Dicer in vitro.

conclusionsOur results identify CCAT2 as a negative regulator of miRNA-145 biogenesis, and expose a novel mechanism of lncRNA-miRNA crosstalk.

Indexed as

Epistasis, GeneticGene Expression Regulation, NeoplasticRNA InterferenceCell Line, TumorColonic NeoplasmsDisease ProgressionHumansMicroRNAsRNA, Long Noncodinglong non-coding RNA CCAT2, humanMicroRNAsMIRN145 microRNA, humanRNA, Long Noncodingcancer stem cellslncRNA-miRNA crosstalkmiRNA biogenesis

Identifiers

PMID28964256
PMCPMC5622467
OpenAlexW2757042270

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.