Evidence map›Paper›PMID 28964004›Full record

ArticleThe Journal of chemical physics2017

Quasiharmonic analysis of protein energy landscapes from pressure-temperature molecular dynamics simulations.

Jocelyn M Rodgers, Russell J Hemley, Toshiko Ichiye

Open access · greenAbstract read
In one paragraph

Article in The Journal of chemical physics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Enzymes from piezophiles.Seminars in cell & developmental biology · 2018
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jocelyn M RodgersDepartment of Chemistry, Georgetown University, Washington, DC 20057, USA.
Russell J HemleyDepartment of Civil and Environmental Engineering, The George Washington University, Washington, DC 20052, USA.
Toshiko IchiyeDepartment of Chemistry, Georgetown University, Washington, DC 20057, USA.ORCID 0000000324745253
Georgetown University · USGeorge Washington University · US

Funding

Computational Studies of the Molecular Basis of Natural and Acquired Resistance to Extremes in MicrobesR01GM122441 · NIGMS · GEORGETOWN UNIVERSITY · PI SWIFT, JENNIFER A · 2017 to 2022
$1.8M
NIGMS NIH HHS R01 GM122441
6 · The paper itself

Abstract

Positional fluctuations of an atom in a protein can be described as motion in an effective local energy minimum created by the surrounding protein atoms. The dependence of atomic fluctuations on both temperature (T) and pressure (P) has been used to probe the nature of these minima, which are generally described as harmonic in experiments such as x-ray crystallography and neutron scattering. Here, a quasiharmonic analysis method is presented in which the P-T dependence of atomic fluctuations is in terms of an intrinsic isobaric thermal expansivity α

Indexed as

Models, ChemicalMolecular Dynamics SimulationPressureProteinsTemperatureThermodynamicsProteins

Identifiers

PMID28964004
PMCPMC5942443
OpenAlexW2757886212

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.