Evidence map›Paper›PMID 28963165›Full record

ArticleG3 (Bethesda, Md.)2017

First Draft Genome Sequence of the Pathogenic Fungus

Ruibang Luo, Aleksey Zimin, Rachael Workman, Yunfan Fan, Geo Pertea, Nina Grossman, Maggie P Wear, Bei Jia, Heather Miller, Arturo Casadevall and 3 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. mSphere · 2025
    Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Journal of fungi (Basel, Switzerland) · 2021
    Review
  12. Review
  13. Article
  14. Investigation of aMedical mycology case reports · 2020
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Ruibang LuoCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205.ORCID 0000-0001-9711-6533
Aleksey ZiminCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205.
Rachael WorkmanDepartment of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205.
Yunfan FanDepartment of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205.
Geo PerteaCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205.
Nina GrossmanDepartment of Molecular Microbiology and Immunology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
Maggie P WearDepartment of Molecular Microbiology and Immunology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
Bei JiaDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287.
Heather MillerDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287.
Arturo CasadevallDepartment of Molecular Microbiology and Immunology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205.
Winston TimpDepartment of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205.
Sean X ZhangCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 szhang28@jhmi.edu salzberg@jhu.edu.
Steven L SalzbergCenter for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 szhang28@jhmi.edu salzberg@jhu.edu.ORCID 0000-0002-8859-7432
Johns Hopkins University · USJohns Hopkins Medicine · US

Funding

Training: Molecular & Cellular Bases of Infectious DiseasesT32AI007417 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Arturo Casadevall · 1994 to 2026
$11.9M
Computational Methods for Genome Assembly, Transcript Assembly, and Variant DiscoveryR01HG006677 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI SALZBERG, STEVEN L. · 2011 to 2025
$10.7M
Bioinformatics Software for Analyzing Microbial GenomesR01GM083873 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 2008 to 2017
$2.1M
A Software Framework for Exploring 1,000 Genomes of African DescentR01HL129239 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI BARNES, KATHLEEN C, SALZBERG, STEVEN L. · 2015 to 2017
$1.4M
NHGRI NIH HHS R01 HG006677NHLBI NIH HHS R01 HL129239NIAID NIH HHS T32 AI007417NIGMS NIH HHS R01 GM083873
6 · The paper itself

Abstract

Here we describe the sequencing and assembly of the pathogenic fungus

Indexed as

Genome, FungalMolecular Sequence AnnotationFungal ProteinsScedosporiumWhole Genome SequencingFungal Proteinsfungal genomicsgenome assemblynanopore sequencingpathogen genomics

Identifiers

PMID28963165
PMCPMC5677167
OpenAlexW2952768030

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.