Evidence map›Paper›PMID 28963118›Full record

Trial reportScience immunology2017

Dynamics of the human antibody repertoire after B cell depletion in systemic sclerosis.

Charles F A de Bourcy, Cornelia L Dekker, Mark M Davis, Mark R Nicolls, Stephen R Quake

Open access · greenAbstract readClinical Trial, Phase IIMulticenter StudyRandomized Controlled Trial
In one paragraph

Trial report in Science immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 55 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Charles F A de BourcyDepartment of Applied Physics, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0001-7502-2261
Cornelia L DekkerDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0002-3871-918X
Mark M DavisDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-6868-657X
Mark R NicollsDivision of Pulmonary and Critical Care Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-9473-7422
Stephen R QuakeDepartment of Applied Physics, Stanford University, Stanford, CA 94305, USA. quake@stanford.edu.ORCID 0000-0002-1613-0809
Stanford University · USChan Zuckerberg Initiative (United States) · USHoward Hughes Medical Institute · USVA Palo Alto Health Care System · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
VRAC and Rho in pulmonary EC proliferationP01HL014985 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI STENMARK, KURT R. · 1985 to 2019
$35.1M
Stanford Center for Clinical and Translational Education and Research (SCCTER)UL1UL1RR025744 · NCRR · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2008 to 2011
$22.4M
MHC peptide tetramers in type 1 diabetesU19AI046374 · NIAID · UNIVERSITY OF COLORADO DENVER · PI HOLERS, VERNON MICHAEL · 1999 to 2007
$9.6M
Endothelial Injury, BMPR2 Dysfunction and Macrophage Activation Cause EndMT and PAHR01HL138473 · NHLBI · STANFORD UNIVERSITY · PI Mark Robert Nicolls, Marlene Rabinovitch · 2017 to 2026
$4.9M
Integrative Omics as a Discovery Tool for Pulmonary HypertensionR01HL122887 · NHLBI · STANFORD UNIVERSITY · PI NICOLLS, MARK ROBERT, RABINOVITCH, MARLENE · 2015 to 2018
$4.1M
Ultra-Fast Epigenomic Maps for Monitoring AutoimmunityU19AI110491 · NIAID · STANFORD UNIVERSITY · PI MAECKER, HOLDEN T. · 2014 to 2018
$3.6M
MURINE T-CELL RECEPTOR STRUCTURE AND RECOGNITIONR37AI022511 · NIAID · STANFORD UNIVERSITY · PI DAVIS, MARK MORRIS · 1995 to 2004
$1.3M
NCRR NIH HHS UL1 RR025744NHLBI NIH HHS P01 HL014985NHLBI NIH HHS R01 HL122887NHLBI NIH HHS R01 HL138473NIAID NIH HHS R37 AI022511NIAID NIH HHS U19 AI046374NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI110491
6 · The paper itself

Abstract

Systemic sclerosis with pulmonary arterial hypertension (SSc-PAH) is a debilitating and frequently lethal disease of unknown cause lacking effective treatment options. Lymphocyte anomalies and autoantibodies observed in systemic sclerosis have suggested an autoimmune character. We study the clonal structure of the B cell repertoire in SSc-PAH using immunoglobulin heavy chain (IGH) sequencing before and after B cell depletion. We found SSc-PAH to be associated with anomalies in B cell development, namely, altered VDJ rearrangement frequencies (reduced IGHV2-5 segment usage) and an increased somatic mutation-fixation probability in expanded B cell lineages. SSc-PAH was also characterized by anomalies in B cell homeostasis, namely, an expanded immunoglobulin D-positive (IgD

Indexed as

Lymphocyte DepletionAgedAutoimmune DiseasesB-LymphocytesDouble-Blind MethodFemaleHigh-Throughput Nucleotide SequencingHumansHypertension, PulmonaryImmune ReconstitutionImmunoglobulin Heavy ChainsImmunologic FactorsLongitudinal StudiesMiddle AgedPlacebosPlasma CellsImmunoglobulin Heavy ChainsImmunologic FactorsPlacebosRituximab

Identifiers

PMID28963118
PMCPMC5800854
OpenAlexW2951267902

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.