Evidence map›Paper›PMID 28961793›Full record

ArticleThe Journal of antimicrobial chemotherapy2017

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission.

Jessica Martin, Hang T T Phan, Jacqueline Findlay, Nicole Stoesser, Louise Pankhurst, Indre Navickaite, Nicola De Maio, David W Eyre, Giles Toogood, Nicolas M Orsi and 10 more

Abstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Genomic characterization ofApplied and environmental microbiology · 2025
    Article
  3. Virulence profile of carbapenem-resistantMicrobiology spectrum · 2025
    Article
  4. Review
  5. Review
  6. Molecular and epidemiological characterization of carbapenem-resistant hypervirulentFrontiers in cellular and infection microbiology · 2025
    Article
  7. Resistome Analysis ofMicroorganisms · 2024
    Article
  8. Molecular epidemiology and antimicrobial resistance profiles ofFrontiers in cellular and infection microbiology · 2024
    Article
  9. Review
  10. Article
  11. Plasmid genomic epidemiology ofAntimicrobial agents and chemotherapy · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Genomic Characteristics of a Multidrug-Resistant ST648Infection and drug resistance · 2023
    Article
  19. Pandemic one health clones ofFrontiers in cellular and infection microbiology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Jessica MartinHealthcare-Associated Infection Research Group, University of Leeds, Leeds, UK.
Hang T T PhanNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Jacqueline FindlayAntimicrobial Resistance and Healthcare Associated Infections (AMRHAI) Reference Unit, National Infection Service, Public Health England, London, UK.
Nicole StoesserNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Louise PankhurstNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Indre NavickaiteNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Nicola De MaioNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
David W EyreNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Giles ToogoodDepartment of Hepatobiliary Surgery, Leeds Teaching Hospitals NHS Trust, Leeds, UK.
Nicolas M OrsiHealthcare-Associated Infection Research Group, University of Leeds, Leeds, UK.
Andrew KirbyHealthcare-Associated Infection Research Group, University of Leeds, Leeds, UK.
Nicola YoungClinical Microbiology Department, Leeds Teaching Hospitals NHS Trust, Leeds, UK.
Jane F TurtonAntimicrobial Resistance and Healthcare Associated Infections (AMRHAI) Reference Unit, National Infection Service, Public Health England, London, UK.
Robert L R HillNIHR Health Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK.
Katie L HopkinsNIHR Health Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK.
Neil WoodfordNIHR Health Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance at University of Oxford in partnership with Public Health England, Oxford, UK.
Tim E A PetoNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
A Sarah WalkerNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Derrick W CrookNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Mark H WilcoxHealthcare-Associated Infection Research Group, University of Leeds, Leeds, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCarbapenemase-producing Enterobacteriaceae (CPE), including KPC-producing Klebsiella pneumoniae (KPC-Kpn), are an increasing threat to patient safety.

objectivesTo use WGS to investigate the extent and complexity of carbapenemase gene dissemination in a controlled KPC outbreak. MATERIALS AND

methodsEnterobacteriaceae with reduced ertapenem susceptibility recovered from rectal screening swabs/clinical samples, during a 3 month KPC outbreak (2013-14), were investigated for carbapenemase production, antimicrobial susceptibility, variable-number-tandem-repeat profile and WGS [short-read (Illumina), long-read (MinION)]. Short-read sequences were used for MLST and plasmid/Tn4401 fingerprinting, and long-read sequence assemblies for plasmid identification. Phylogenetic analysis used IQTree followed by ClonalFrameML, and outbreak transmission dynamics were inferred using SCOTTI.

resultsTwenty patients harboured KPC-positive isolates (6 infected, 14 colonized), and 23 distinct KPC-producing Enterobacteriaceae were identified. Four distinct KPC plasmids were characterized but of 20 KPC-Kpn (from six STs), 17 isolates shared a single pKpQIL-D2 KPC plasmid. All isolates had an identical transposon (Tn4401a), except one KPC-Kpn (ST661) with a single nucleotide variant. A sporadic case of KPC-Kpn (ST491) with Tn4401a-carrying pKpQIL-D2 plasmid was identified 10 months before the outbreak. This plasmid was later seen in two other species and other KPC-Kpn (ST14,ST661) including clonal spread of KPC-Kpn (ST661) from a symptomatic case to nine ward contacts.

conclusionsWGS of outbreak KPC isolates demonstrated blaKPC dissemination via horizontal transposition (Tn4401a), plasmid spread (pKpQIL-D2) and clonal spread (K. pneumoniae ST661). Despite rapid outbreak control, considerable dissemination of blaKPC still occurred among K. pneumoniae and other Enterobacteriaceae, emphasizing its high transmission potential and the need for enhanced control efforts.

Indexed as

Disease OutbreaksGenome, BacterialAdultAgedBacterial Proteinsbeta-LactamasesCross InfectionDNA, BacterialEnterobacteriaceaeFemaleGene Transfer, HorizontalHumansKlebsiella InfectionsKlebsiella pneumoniaeMaleMiddle AgedBacterial Proteinsbeta-LactamasescarbapenemaseDNA, Bacterial

Identifiers

PMID28961793
PMCPMC5890743

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.