Evidence map›Paper›PMID 28961761›Full record

ArticleBioinformatics (Oxford, England)2017

clustComp, a bioconductor package for the comparison of clustering results.

Aurora Torrente, Alvis Brazma

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Aurora TorrenteDepartamento de Ciencia e Ingeniería de Materiales e Ingeniería Química, Instituto Gregorio Millán, Universidad Carlos III de Madrid, 28911 Leganés, Spain.
Alvis BrazmaEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

summaryclustComp is an open source Bioconductor package that implements different techniques for the comparison of two gene expression clustering results. These include flat versus flat and hierarchical versus flat comparisons. The visualization of the similarities is provided by means of a bipartite graph, whose layout is heuristically optimized. Its flexibility allows a suitable visualization for both small and large datasets. AVAILABILITY AND IMPLEMENTATION: The package is available at http://bioconductor.org/packages/clustComp/ and contains a 'vignette' outlying the typical use of the algorithms. CONTACT: etorrent@est-econ.uc3m.es. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Indexed as

SoftwareAlgorithmsCluster AnalysisGene Expression Profiling

Identifiers

PMID28961761
PMCPMC5860092

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.