Evidence map›Paper›PMID 28961369›Full record

ArticleProteomics2017

Phosphoproteomics Profiling of Nonsmall Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator.

Danica D Wiredja, Marzieh Ayati, Sahar Mazhar, Jaya Sangodkar, Sean Maxwell, Daniela Schlatzer, Goutham Narla, Mehmet Koyutürk, Mark R Chance

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Proteomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  9. Phosphoproteomic analysis identifies CLK1 as a novel therapeutic target in gastric cancer.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Danica D WiredjaCenter for Proteomics and Bioinformatics, Department of Nutrition, Case Western Reserve University, Cleveland, OH, USA.
Marzieh AyatiDepartment of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH, USA.
Sahar MazharDepartment of Pathology, Case Western Reserve University,, Cleveland, OH, USA.
Jaya SangodkarDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, NY, USA.
Sean MaxwellCenter for Proteomics and Bioinformatics, Department of Nutrition, Case Western Reserve University, Cleveland, OH, USA.
Daniela SchlatzerCenter for Proteomics and Bioinformatics, Department of Nutrition, Case Western Reserve University, Cleveland, OH, USA.
Goutham NarlaCase Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH, USA.
Mehmet KoyutürkDepartment of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH, USA.
Mark R ChanceCenter for Proteomics and Bioinformatics, Department of Nutrition, Case Western Reserve University, Cleveland, OH, USA.
Case Western Reserve University · USIcahn School of Medicine at Mount Sinai · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Amar Desai · 1987 to 2026
$142.3M
Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
NRSA Training CoreTL1TR002549 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI HARDING, CLIFFORD V · 2018 to 2022
$2.9M
Clinical and Translational Science Collaborative of ClevelandTL1TR000441 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$2.8M
Phospho Proteomics Alzheimers SupplementR01GM117208 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2016 to 2018
$1.4M
NCATS NIH HHS TL1 TR000441NCATS NIH HHS TL1 TR002549NCATS NIH HHS UL1 TR000439NCI NIH HHS P30 CA043703NIGMS NIH HHS R01 GM117208NIGMS NIH HHS T32 GM007250
6 · The paper itself

Abstract

Activation of protein phosphatase 2A (PP2A) is a promising anticancer therapeutic strategy, as this tumor suppressor has the ability to coordinately downregulate multiple pathways involved in the regulation of cellular growth and proliferation. In order to understand the systems-level perturbations mediated by PP2A activation, we carried out mass spectrometry-based phosphoproteomic analysis of two KRAS mutated non-small cell lung cancer (NSCLC) cell lines (A549 and H358) treated with a novel small molecule activator of PP2A (SMAP). Overall, this permitted quantification of differential signaling across over 1600 phosphoproteins and 3000 phosphosites. Kinase activity assessment and pathway enrichment implicate collective downregulation of RAS and cell cycle kinases in the case of both cell lines upon PP2A activation. However, the effects on RAS-related signaling are attenuated for A549 compared to H358, while the effects on cell cycle-related kinases are noticeably more prominent in A549. Network-based analyses and validation experiments confirm these detailed differences in signaling. These studies reveal the power of phosphoproteomics studies, coupled to computational systems biology, to elucidate global patterns of phosphatase activation and understand the variations in response to PP2A activation across genetically similar NSCLC cell lines.

Indexed as

Carcinoma, Non-Small-Cell LungCell CycleCell Line, TumorCell ProliferationGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansLung NeoplasmsMass SpectrometryPhosphoproteinsPhosphorylationProtein Phosphatase 2ProteomicsSignal TransductionSmall Molecule LibrariesPhosphoproteinsProtein Phosphatase 2Small Molecule Librarieslabel-freenonsmall cell lung cancerphosphatasephosphoproteomicssignaling

Identifiers

PMID28961369
PMCPMC7656239
OpenAlexW2759118393

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.