Evidence map›Paper›PMID 28960434›Full record

ArticleAmerican journal of hematology2018

Utility and limitations of exome sequencing in the molecular diagnosis of pediatric inherited platelet disorders.

Edward J Romasko, Batsal Devkota, Sawona Biswas, Vijayakumar Jayaraman, Ramakrishnan Rajagopalan, Matthew C Dulik, Christopher S Thom, Jiwon Choi, Sowmya Jairam, Maria I Scarano and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of hematology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Role of Thrombopoietin Receptor Agonists in Inherited Thrombocytopenia.International journal of molecular sciences · 2021
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Clinical Application of Genome and Exome Sequencing as a Diagnostic Tool for Pediatric Patients: a Scoping Review of the Literature.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Edward J RomaskoDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.ORCID 0000-0001-9806-2266
Batsal DevkotaDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Sawona BiswasDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Vijayakumar JayaramanDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Ramakrishnan RajagopalanDepartment of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Matthew C DulikDivision of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Christopher S ThomDepartment of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, Philadelphia, Pennsylvania.
Jiwon ChoiDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Sowmya JairamDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-1898-6408
Maria I ScaranoDivision of Genetics, Cooper Health System, Camden, New Jersey.
Ian D KrantzDivision of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Nancy B SpinnerDivision of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Laura K ConlinDivision of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Michele P LambertDepartment of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, Philadelphia, Pennsylvania.ORCID 0000-0003-0439-402X
Children's Hospital of Philadelphia · USCooper University Health Care · USMemorial Sloan Kettering Cancer Center · USUniversity of Pennsylvania · US

Funding

Applying Genomic Sequencing in PediatricsU01HG006546 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI KRANTZ, IAN D. · 2012 to 2016
$10.6M
NHGRI NIH HHS U01 HG006546
6 · The paper itself

Abstract

Inherited platelet disorders (IPD) are a heterogeneous group of rare disorders that affect platelet number and function and often predispose to other significant medical complications. In spite of the identification of over 50 IPD disease-associated genes, a molecular diagnosis is only identified in a minority (10%) of affected patients without a clinically suspected etiology. We studied a cohort of 21 pediatric patients with suspected IPDs by exome sequencing (ES) to: (1) examine the performance of the exome test for IPD genes, (2) determine if this exome-wide diagnostic test provided a higher diagnostic yield than has been previously reported, (3) to evaluate the frequency of variants of uncertain significance identified, and (4) to identify candidate variants for functional evaluation in patients with an uncertain or negative diagnosis. We established a high priority gene list of 53 genes, evaluated exome capture kit performance, and determined the coverage for these genes and disease-related variants. We identified likely disease causing variants in 5 of the 21 probands (23.8%) and variants of uncertain significance in 52% of patients studied. In conclusion, ES has the potential to molecularly diagnose causes of IPD, and to identify candidate genes for functional evaluation. Robust exome sequencing also requires that coverage of genes known to be associated with clinical findings of interest need to be carefully examined and supplemented if necessary. Clinicians who undertake ES should understand the limitations of the test and the full significance of results that may be returned.

Indexed as

Blood Platelet DisordersChildExomeFemaleGenetic Predisposition to DiseaseHumansMalePolymorphism, Single NucleotideSequence Analysis, DNA

Identifiers

PMID28960434
PMCPMC6366456
OpenAlexW2760182656

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.