Evidence map›Paper›PMID 28960244›Full record

ArticleBiometrics2018

Case-only approach to identifying markers predicting treatment effects on the relative risk scale.

James Y Dai, C Jason Liang, Michael LeBlanc, Ross L Prentice, Holly Janes

Abstract read
In one paragraph

Article in Biometrics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

James Y DaiPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, U.S.A.ORCID 0000-0001-6479-9286
C Jason LiangBiostatistics Research Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland, U.S.A.
Michael LeBlancPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, U.S.A.
Ross L PrenticePublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, U.S.A.
Holly JanesVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, U.S.A.

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
SWOG Statistics & Data Management Center complex - extension supplement for GY06U10CA180819 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Michael L. LeBlanc · 2014 to 2026
$115.2M
SOUTHWEST ONCOLOGY GROUP--STATISTICAL CENTERU10CA038926 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI LEBLANC, MICHAEL L. · 1985 to 2013
$69.8M
Use of Biomarkers in Diagnosis, Prognosis, Risk Prediction and Early Detection ofP01CA053996 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HSU, LI · 1991 to 2015
$9.4M
PCPT and SELECT cohorts: Core Infrastructure Support for Cancer Research UM1CA182883 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TANGEN, CATHERINE M., THOMPSON, IAN M. · 2013 to 2017
$5.2M
Statistical Methods for Evaluating Markers for Treatment SelectionR01CA152089 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI JANES, HOLLY · 2010 to 2021
$3.8M
Statistical inference in genome-wide association and sequencing studiesR01HL114901 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DAI, JAMES · 2012 to 2015
$1.7M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
Genomic studies for understanding etiology of esophageal adenocarcinomaR21CA197502 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DAI, JAMES · 2015 to 2016
$394k
NCI NIH HHS P01 CA053996NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA152089NCI NIH HHS R21 CA197502NCI NIH HHS U10 CA038926NCI NIH HHS U10 CA180819NCI NIH HHS UM1 CA182883NHLBI NIH HHS R01 HL114901NIH HHS S10 OD020069
6 · The paper itself

Abstract

Retrospectively measuring markers on stored baseline samples from participants in a randomized controlled trial (RCT) may provide high quality evidence as to the value of the markers for treatment selection. Originally developed for approximating gene-environment interactions in the odds ratio scale, the case-only method has recently been advocated for assessing gene-treatment interactions on rare disease endpoints in randomized clinical trials. In this article, the case-only approach is shown to provide a consistent and efficient estimator of marker by treatment interactions and marker-specific treatment effects on the relative risk scale. The prohibitive rare-disease assumption is no longer needed, broadening the utility of the case-only approach. The case-only method is resource-efficient as markers only need to be measured in cases only. It eliminates the need to model the marker's main effect, and can be used with any parametric or nonparametric learning method. The utility of this approach is illustrated by an application to genetic data in the Women's Health Initiative (WHI) hormone therapy trial.

Indexed as

RiskBiomarkersGene-Environment InteractionHumansPrecision MedicinePrognosisRandomized Controlled Trials as TopicBiomarkersGene-treatment interactionHigh-dimensional dataIndividual Treatment effectPrecision medicinePredictive biomarkerTreatment selection

Identifiers

PMID28960244
PMCPMC5874156

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.