Evidence map›Paper›PMID 28959821›Full record

ArticleOrganic & biomolecular chemistry2017

Pseudouridine modifications influence binding of aminoglycosides to helix 69 of bacterial ribosomes.

Yogo Sakakibara, Christine S Chow

Abstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yogo SakakibaraDepartment of Chemistry, Wayne State University, Detroit, MI 48202, USA. cchow@wayne.edu.
Christine S Chow
Wayne State University · US

Funding

The Role of Ribosomal RNA ModificationsR01GM087596 · NIGMS · WAYNE STATE UNIVERSITY · PI CHOW, CHRISTINE S · 2009 to 2012
$1.1M
NIGMS NIH HHS R01 GM087596
6 · The paper itself

Abstract

Development of antibiotics that target new regions of functionality is a possible way to overcome antibiotic resistance. In this study, the interactions of aminoglycoside antibiotics with helix 69 of the E. coli 23S rRNA in the context of complete 70S ribosomes or the isolated 50S subunit were investigated by using chemical probing and footprinting analysis. Helix 69 is a dynamic RNA motif that plays major roles in bacterial ribosome activity. Neomycin, paromomycin, and gentamicin interact with the stem region of helix 69 in complete 70S ribosomes, but have diminished binding to the isolated 50S subunit. Pseudouridine modifications in helix 69 were shown to impact the aminoglycoside interactions. These results suggest a requirement for a specific conformational state of helix 69 for efficient aminoglycoside binding, and imply that this motif may be a suitable target for mechanism-based therapeutics.

Indexed as

AminoglycosidesAnti-Bacterial AgentsBinding SitesCrystallography, X-RayEscherichia coliModels, MolecularMolecular ConformationPseudouridineRNA, Ribosomal, 23SAminoglycosidesAnti-Bacterial AgentsPseudouridineRNA, Ribosomal, 23S

Identifiers

PMID28959821
PMCPMC5663508
OpenAlexW2757722057

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.