Evidence map›Paper›PMID 28957509›Full record

ArticleMolecular biology and evolution2017

Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation.

Duo Xu, Pavlos Pavlidis, Recep Ozgur Taskent, Nikolaos Alachiotis, Colin Flanagan, Michael DeGiorgio, Ran Blekhman, Stefan Ruhl, Omer Gokcumen

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 67 citations in OpenAlex.

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  11. The history and evolution of the Denisovan-Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Duo XuDepartment of Biological Sciences, University at Buffalo, The State University of New York, Buffalo, NY.
Pavlos PavlidisInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology - Hellas, Heraklion, Crete, Greece.
Recep Ozgur TaskentDepartment of Biological Sciences, University at Buffalo, The State University of New York, Buffalo, NY.
Nikolaos AlachiotisInstitute of Computer Science (ICS), Foundation for Research and Technology - Hellas, Heraklion, Crete, Greece.
Colin FlanaganDepartment of Biological Sciences, University at Buffalo, The State University of New York, Buffalo, NY.
Michael DeGiorgioDepartment of Biology and the Institute for CyberScience, Pennsylvania State University, University Park, PA.
Ran BlekhmanDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Twin Cities, MN.
Stefan RuhlDepartment of Oral Biology, School of Dental Medicine, University at Buffalo, The State University of New York, Buffalo, NY.
Omer GokcumenDepartment of Biological Sciences, University at Buffalo, The State University of New York, Buffalo, NY.
University at Buffalo, State University of New York · USFoundation for Research and Technology Hellas · GRPennsylvania State University · USUniversity of Minnesota · US

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
Microbial Recognition of Sialic Acid Diversity in the Salivary ProteomeR01DE019807 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RUHL, STEFAN HANS-KLAUS · 2010 to 2022
$4.7M
HARNESSING THE ORAL MICROBIOME TO CREATE NOVEL GLYCAN-BINDING PROBESU01CA221244 · NCI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RUHL, STEFAN HANS-KLAUS, SULLAM, PAUL M. · 2017 to 2019
$1.4M
MINING THE ORAL MICROBIOME FOR NOVEL GLYCAN-BINDING MOLECULESR21DE025826 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RUHL, STEFAN HANS-KLAUS, SULLAM, PAUL M. · 2015 to 2016
$638k
NIDCR NIH HHS R01 DE019807NIDCR NIH HHS R21 DE025826
6 · The paper itself

Abstract

One of the most abundant proteins in human saliva, mucin-7, is encoded by the MUC7 gene, which harbors copy number variable subexonic repeats (PTS-repeats) that affect the size and glycosylation potential of this protein. We recently documented the adaptive evolution of MUC7 subexonic copy number variation among primates. Yet, the evolution of MUC7 genetic variation in humans remained unexplored. Here, we found that PTS-repeat copy number variation has evolved recurrently in the human lineage, thereby generating multiple haplotypic backgrounds carrying five or six PTS-repeat copy number alleles. Contrary to previous studies, we found no associations between the copy number of PTS-repeats and protection against asthma. Instead, we revealed a significant association of MUC7 haplotypic variation with the composition of the oral microbiome. Furthermore, based on in-depth simulations, we conclude that a divergent MUC7 haplotype likely originated in an unknown African hominin population and introgressed into ancestors of modern Africans.

Indexed as

AllelesAnimalsAsthmaDNA Copy Number VariationsEvolution, MolecularExonsGenetic VariationGlycosylationHaplotypesHominidaeHumansMicrobiotaMucinsPhylogenySalivaSalivary Proteins and PeptidesMUC7 protein, humanMucinsSalivary Proteins and PeptidesABC simulationCNVhuman evolutionmicrobiomemucinrecurrent mutationsalivastructural variation

Identifiers

PMID28957509
PMCPMC5850612
OpenAlexW2725812022

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.