Evidence map›Paper›PMID 28957461›Full record

ArticleGenome biology and evolution2017

Evolution of Alu Subfamily Structure in the Saimiri Lineage of New World Monkeys.

Jasmine N Baker, Jerilyn A Walker, John A Vanchiere, Kacie R Phillippe, Corey P St Romain, Paulina Gonzalez-Quiroga, Michael W Denham, Jackson R Mierl, Miriam K Konkel, Mark A Batzer

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Framework of theGenes · 2023
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  4. Owl MonkeyGenes · 2022
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  5. Review
  6. Review
  7. Recently IntegratedGenes · 2022
    Article
  8. Article
  9. Recently integratedMobile DNA · 2018
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jasmine N BakerDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Jerilyn A WalkerDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
John A VanchiereDepartment of Microbiology and Immunology, Louisiana State University Health Sciences Center, Shreveport.
Kacie R PhillippeDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Corey P St RomainDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Paulina Gonzalez-QuirogaDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Michael W DenhamDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Jackson R MierlDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Miriam K KonkelDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Mark A BatzerDepartment of Biological Sciences, Louisiana State University, Baton Rouge.
Louisiana State University · USClemson University · USLouisiana State University Health Sciences Center Shreveport · US

Funding

POPULATION GENETICS OF MOBILE ELEMENTSR01GM059290 · NIGMS · UNIVERSITY OF UTAH · PI BATZER, MARK A, FESCHOTTE, CEDRIC · 1999 to 2018
$8.5M
NIGMS NIH HHS R01 GM059290
6 · The paper itself

Abstract

Squirrel monkeys, Saimiri, are commonly found in zoological parks and used in biomedical research. S. boliviensis is the most common species for research; however, there is little information about genome evolution within this primate lineage. Here, we reconstruct the Alu element sequence amplification and evolution in the genus Saimiri at the time of divergence within the family Cebidae lineage. Alu elements are the most successful SINE (Short Interspersed Element) in primates. Here, we report 46 Saimiri lineage specific Alu subfamilies. Retrotransposition activity involved subfamilies related to AluS, AluTa10, and AluTa15. Many subfamilies are simultaneously active within the Saimiri lineage, a finding which supports the stealth model of Alu amplification. We also report a high resolution analysis of Alu subfamilies within the S. boliviensis genome [saiBol1].

Indexed as

Evolution, MolecularAlu ElementsAnimalsSaimiriAluevolutionretrotransposonSaimirisubfamilies

Identifiers

PMID28957461
PMCPMC5622375
OpenAlexW2751745484

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.