Evidence map›Paper›PMID 28957425›Full record

ArticlePloS one2017

A tissue-specific promoter derived from a SINE retrotransposon drives biallelic expression of PLAGL1 in human lymphocytes.

Claire E L Smith, Alexia Alexandraki, Sarah F Cordery, Rekha Parmar, David T Bonthron, Elizabeth M A Valleley

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Claire E L SmithSchool of Medicine, University of Leeds, St. James's University Hospital, Leeds, United Kingdom.
Alexia AlexandrakiSchool of Medicine, University of Leeds, St. James's University Hospital, Leeds, United Kingdom.
Sarah F CorderySchool of Medicine, University of Leeds, St. James's University Hospital, Leeds, United Kingdom.
Rekha ParmarSchool of Medicine, University of Leeds, St. James's University Hospital, Leeds, United Kingdom.
David T BonthronSchool of Medicine, University of Leeds, St. James's University Hospital, Leeds, United Kingdom.
Elizabeth M A ValleleySchool of Medicine, University of Leeds, St. James's University Hospital, Leeds, United Kingdom.ORCID http://orcid.org/0000-0002-7156-4415
University of Leeds · GB

Funding

Medical Research Council MR/M009084/1
6 · The paper itself

Abstract

The imprinted gene PLAGL1 is an important regulator of apoptosis and cell cycle arrest. Loss of its expression has been implicated in tumorigenesis in a range of different cancers, and overexpression during fetal development causes transient neonatal diabetes mellitus (TNDM). PLAGL1 lies within an imprinted region of chromosome 6q24, and monoallelic expression from the major, differentially methylated promoter (P1) occurs in most human tissues. However, in peripheral blood leukocytes, the active promoter (P2) is non-imprinted and drives biallelic transcription. We report here a novel PLAGL1 promoter (P5) derived from the insertion of a primate-specific, MIR3 SINE retrotransposon. P5 is highly utilized in lymphocytes, particularly in T cells, and like P2, directs biallelic transcription. Our results show that it is important to consider P5 in relation to PLAGL1 function in T cells when investigating the dysregulation of this gene.

Indexed as

AllelesPromoter Regions, GeneticRetroelementsB-LymphocytesCell Cycle ProteinsCpG IslandsHumansReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA, MessengerShort Interspersed Nucleotide ElementsT-LymphocytesTranscription FactorsTranscription, GeneticTumor Suppressor ProteinsCell Cycle ProteinsPLAGL1 protein, humanRetroelementsRNA, MessengerTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID28957425
PMCPMC5619815
OpenAlexW2759781780

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.