ArticleFunctional & integrative genomics2018
Identification of drought-responsive microRNAs in tomato using high-throughput sequencing.
Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.
What it found
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
26 citing papers in PubMed, 1 synthesis or guideline pooled it.
- The role of microRNAs in responses to drought and heat stress in peanut (Arachis hypogaea).The plant genome · 2023Pooled it
- Transcriptome, miRNA, and degradome sequencing reveal the leaf stripe (Pyrenophora graminea) resistance genes in Tibetan hulless barley.BMC plant biology · 2025Article
- Deciphering Drought Resilience in Solanaceae Crops: Unraveling Molecular and Genetic Mechanisms.Biology · 2024Review
- Genome-wide characterization and expression profiling of E2F/DP gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.).BMC plant biology · 2024Article
- Whole-Transcriptome Sequencing Reveals the Global Molecular Responses and NAC Transcription Factors Involved in Drought Stress inAntioxidants (Basel, Switzerland) · 2024Article
- Effect of long-term deficit irrigation on tomato and goji berry quality: from fruit composition toFrontiers in plant science · 2024Article
- Coordinating Diverse Functions of miRNA and lncRNA in Fleshy Fruit.Plants (Basel, Switzerland) · 2023Review
- Candidate regulators of drought stress in tomato revealed by comparative transcriptomic and proteomic analyses.Frontiers in plant science · 2023Article
- Comprehensive Genome-Wide Analysis and Expression Pattern Profiling ofPlants (Basel, Switzerland) · 2022Article
- Comprehensive Genome-Wide Analysis and Expression Pattern Profiling of theInternational journal of molecular sciences · 2022Article
- Tomato MicroRNAs and Their Functions.International journal of molecular sciences · 2022Review
- Review
- Regulatory network established by transcription factors transmits drought stress signals in plant.Stress biology · 2022Review
- Drought tolerance improvement in3 Biotech · 2022Review
- Genome-wide identification and expression profiling of Alba gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.).BMC plant biology · 2021Article
- Utilization of Transcriptome, Small RNA, and Degradome Sequencing to Provide Insights Into Drought Stress and Rewatering Treatment inFrontiers in plant science · 2021Article
- Temporal responses of conserved miRNAs to drought and their associations with drought tolerance and productivity in rice.BMC genomics · 2020Article
- Unique miRNAs and their targets in tomato leaf responding to combined drought and heat stress.BMC plant biology · 2020Article
- Differential expression of microRNAs in tomato leaves treated with different light qualities.BMC genomics · 2020Article
- Article
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
Drought is a major abiotic stress affecting crop productivity and quality. As a class of noncoding RNA, microRNA (miRNA) plays important roles in plant growth, development, and stress response. However, their response and roles in tomato drought stress is largely unknown. Here, by using high-throughput sequencing, we compared the miRNA profiles before and after drought treatment in two tomato genotypes: M82, a drought-sensitive cultivated tomato (Solanum lycopersicum), and IL2-5, a drought-tolerant introgression line derived from M82 and the tomato wild species S. pennellii (LA0716). A total of 108 conserved and 208 novel miRNAs were identified, among them, 32 and 68 were significantly changed in expression after stress. Further, 1936 putative target genes were predicted for those differentially-expressed miRNAs. Gene ontology and pathway analysis showed that many of the target genes were involved in stress resistance, such as genes in GO terms including response to stress, defense response, response to stimulus, phosphorylation, and signal transduction. Our results suggested that miRNAs play an essential role in the drought response of tomato. This work will help to further characterize specific miRNAs functioning in drought tolerance.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.