Evidence map›Paper›PMID 28955782›Full record

ArticleBiochemistry and biophysics reports2017

Visualization of ceramide channels in lysosomes following endogenous palmitoyl-ceramide accumulation as an initial step in the induction of necrosis.

Mototeru Yamane, Shota Moriya, Hiroko Kokuba

Open access · goldAbstract read
In one paragraph

Article in Biochemistry and biophysics reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mototeru YamaneDepartment of Biochemistry, Tokyo Medical University, 6-1-1 Shinjuku, Shinjuku-ku, Tokyo 160, Japan.
Shota MoriyaDepartment of Biochemistry, Tokyo Medical University, 6-1-1 Shinjuku, Shinjuku-ku, Tokyo 160, Japan.
Hiroko KokubaJoint-Use Laboratories, Tokyo Medical University, 6-1-1 Shinjuku, Shinjuku-ku, Tokyo 160, Japan.
Tokyo Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we showed that the dual addition of glucosyl ceramide synthase and ceramidase inhibitors to A549 cell culture led to the possibility of ceramide channel formation via endogenous palmitoyl-ceramide accumulation with an increase in cholesterol contents in the lysosome membrane as an initial step prior to initiation of necrotic cell death. In addition, the dual addition led to black circular structures of 10-20 nm, interpreted as stain-filled cylindrical channels on transmission electron microscopy. The formation of palmitoyl-ceramide channels in the lysosome membrane causes the liberation of cathepsin B from lysosomes for necrotic cell death. On the other hand, necrotic cell death in the dual addition was not caused by oxidative stress or cathepsin B activity, and the cell death was free from the contribution of the translation of Bax protein to the lysosome membrane.

Indexed as

acridine orange, 3,6-Bis(dimethylamino) acridine hydrochlorideAPCI, atmospheric pressure chemical ionizationBax, BCL2-associated X proteinC16:0-Cer, palmitoyl-CerCA-74Me, [(2S,3S)-3-Propylcarbamoyloxirane-2-carbonyl]-L-isoleucyl-L-proline methyl esterCer, ceramideCerS, ceramide synthased18:0, sphinganined18:1-[D31]C16:0-Cer, N-palmitoyl [D31]-D-erythro-sphingosined18:1, sphingosine[D7]d18:0, D-erythro-sphinganine-D7[D7]d18:1, D-erythro-sphingosine-D7DAPI, 4′,6-diamidino-2-phenylindoleDL-PDMP, DL-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanolDMEM, Dulbecco's modified Eagle's mediumDMSO, dimethyl sulfoxideD-NMAPPD, N-[(1R,2R)-2-hydroxy-1-(hydroxy-methyl)-2-(4-nitrophenyl)ethyl]tetradecanamideDTT, dithiothreitolECL, enhanced chemiluminescence reagentFBS, fetal bovine serumGlcCer, glucosyl ceramideISs, internal standardsLAMP-2, lysosome-associated membrane protein 2LC3B, autophagosomal membrane bound-microtubule-associated protein 1 light chain 3BLMP, lysosomal membrane permeabilityMS, mass spectrometryNAC, N-acetyl-L-cysteinePBS, phosphate buffered salineSDS-PAGE, sodium dodecyl sulfate-polyacrylamide gel electrophoresisSIM, selected ion monitoring

Identifiers

PMID28955782
PMCPMC5614681
OpenAlexW2595955001

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.