Evidence map›Paper›PMID 28955764›Full record

ArticleBiochemistry and biophysics reports2017

The delayed effect of mustard gas on housekeeping gene expression in lung biopsy of chemical injuries.

Marzieh Eghtedardoost, Zuhair Mohammad Hassan, Nayereh Askari, Alireza Sadeghipour, Mohammad Mahdi Naghizadeh, Sara Ghafarpour, Tooba Ghazanfari

Open access · goldAbstract read
In one paragraph

Article in Biochemistry and biophysics reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 9 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Marzieh EghtedardoostDepartment of Medical Immunology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.
Zuhair Mohammad HassanDepartment of Medical Immunology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.
Nayereh AskariDepartment of biology, Faculty of Basic Sciences, Shahid Bahonar University, Kerman, Iran.
Alireza SadeghipourPathology Department, Rasoul Akram Medical Complex, Iran University of Medical Sciences, Tehran, Iran.
Mohammad Mahdi NaghizadehDepartment of Community Medicine and Statistics, Fasa University of Medical Sciences, Fasa, Iran.
Sara GhafarpourImmunoregulation Research Center, Shahed University, Tehran, Iran.
Tooba GhazanfariImmunoregulation Research Center, Shahed University, Tehran, Iran.
Shahed University · IRTarbiat Modares University · IRFasa University of Medical Sciences · IRIran University of Medical Sciences · IRShahid Bahonar University of Kerman · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveSulfur mustard (SM) was used as a chemical weapon in Iraq-Iran war. Exposed people have major complications in important organs such as pulmonary system. Some studies have shown that SM could affect the expression of endogenous genes and non-housekeeping genes, time dependently. To understand the accurate molecular mechanism of the delayed effect of SM, the identification of the gene expression pattern in these patients is essential. Hence, we have evaluated mRNA expression of four common housekeeping genes (ACTIN, PGK1, β2m, GAPDH) in SM-exposed and non-exposed (control) formalin-fixed, paraffin-embedded (FFPE) human lung tissues.

methodParaffin block of lung biopsy of SM-exposed people (11 cases) and people without exposure to SM as control group (9 cases) have been selected. The mRNA expression of four endogenous control genes has been evaluated by qRT-PCR. The stability value of each gene was calculated by different methods.

resultIt was found that ACTIN mRNA has the highest expression (30.26±2.87) and PGK1 has the lowest standard deviation (SD) (30.885±2.215) between pooled groups. The best correlation was between ACTIN and PGK1 expressions. The M value has shown that ACTIN and then PGK1 are the most stable housekeeping genes among. The results obtained from the GeNorm and NormFinder have indicated that the pair ACTIN- PGK1 is the most suitable choice for endogenous control genes.

conclusionACTIN and PGK1 genes are stable in studied lung tissues and are the better than two other housekeeping genes. In addition, mustard gas does not affect their expression in long term.

Indexed as

FFPE lung tissueHousekeeping geneStabilitySulfur mustard

Identifiers

PMID28955764
PMCPMC5614689
OpenAlexW2605430640

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.