Evidence map›Paper›PMID 28955759›Full record

ArticleBiochemistry and biophysics reports2017

Protocols and pitfalls in obtaining fatty acid-binding proteins for biophysical studies of ligand-protein and protein-protein interactions.

Qian Wang, Samar Rizk, Cédric Bernard, May Poh Lai, David Kam, Judith Storch, Ruth E Stark

Open access · goldAbstract read
In one paragraph

Article in Biochemistry and biophysics reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Qian WangDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
Samar RizkDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
Cédric BernardDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
May Poh LaiDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
David KamDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
Judith StorchDepartment of Nutritional Sciences, School of Environmental and Biological Sciences, Rutgers University, New Brunswick, NJ 08901, USA.
Ruth E StarkDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
City College of New York · USCity University of New York · USRutgers, The State University of New Jersey · US

Funding

Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Supplement to DK-38389 Lipid Transport in the IntestineR01DK038389 · NIDDK · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI SAMPATH, HARINI, STORCH, JUDITH · 1992 to 2025
$8.6M
NIDDK NIH HHS R01 DK038389NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Adipocyte fatty acid-binding protein (AFABP: FABP4) is a member of the intracellular lipid-binding protein family that is thought to target long-chain fatty acids to nuclear receptors such as peroxisome proliferator-activated receptor gamma (PPARγ), which in turn plays roles in insulin resistance and obesity. A molecular understanding of AFABP function requires robust isolation of the protein in liganded and free forms as well as characterization of its oligomerization state(s) under physiological conditions. We report development of a protocol to optimize the production of members of this protein family in pure form, including removal of their bound lipids by mixing with hydrophobically functionalized hydroxypropyl dextran beads and validation by two-dimensional NMR spectroscopy. The formation of self-associated or covalently bonded protein dimers was evaluated critically using gel filtration chromatography, revealing conditions that promote or prevent formation of disulfide-linked homodimers. The resulting scheme provides a solid foundation for future investigations of AFABP interactions with key ligand and protein partners involved in lipid metabolism.

Indexed as

AFABP, adipose fatty acid-binding proteinDelipidationDisulfide bondESI-MS, Electrospray Ionization Mass SpectrometryFABP, fatty acid-binding proteinFatty acid-binding proteinGF, Gel filtration chromatographyHomodimerHSQC, [1H–15N] heteronuclear single quantum correlation spectroscopyLCFA, Long-chain fatty acidLigandMALDI-TOF, Matrix-assisted laser desorption/ionization time-of-flight mass spectrometryNMR, Nuclear Magnetic ResonanceNOESY, 2D nuclear Overhauser spectroscopyPPAR, peroxisome proliferator-activated receptorProteinTCEP, tris(2-carboxyethyl)phosphineTEV, Tobacco Etch VirusTOCSY, 2D Total correlation spectroscopy

Identifiers

PMID28955759
PMCPMC5614677
OpenAlexW2610677565

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.