Evidence map›Paper›PMID 28954787›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2017

Mutational Analysis of Gene Fusions Predicts Novel MHC Class I-Restricted T-Cell Epitopes and Immune Signatures in a Subset of Prostate Cancer.

Jennifer L Kalina, David S Neilson, Yen-Yi Lin, Phineas T Hamilton, Alexandra P Comber, Emma M H Loy, S Cenk Sahinalp, Colin C Collins, Faraz Hach, Julian J Lum

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Resistance mechanism to pembrolizumab inInternational cancer conference journal · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Neoantigens: promising targets for cancer therapy.Signal transduction and targeted therapy · 2023
    Review
  9. Article
  10. Review
  11. The abscopal effect: a sense of DNA damage is in the air.The Journal of clinical investigation · 2021
    Review
  12. Review
  13. Article
  14. Association of tumor-infiltrating T-cell density with molecular subtype, racial ancestry and clinical outcomes in prostate cancer.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jennifer L KalinaTrev & Joyce Deeley Research Centre, British Columbia Cancer Agency, Victoria, Canada.
David S NeilsonTrev & Joyce Deeley Research Centre, British Columbia Cancer Agency, Victoria, Canada.
Yen-Yi LinSchool of Computing Science, Simon Fraser University, Burnaby, Canada.
Phineas T HamiltonTrev & Joyce Deeley Research Centre, British Columbia Cancer Agency, Victoria, Canada.
Alexandra P ComberTrev & Joyce Deeley Research Centre, British Columbia Cancer Agency, Victoria, Canada.
Emma M H LoyTrev & Joyce Deeley Research Centre, British Columbia Cancer Agency, Victoria, Canada.
S Cenk SahinalpSchool of Computing Science, Simon Fraser University, Burnaby, Canada.
Colin C CollinsVancouver Prostate Centre, Vancouver, Canada.
Faraz HachSchool of Computing Science, Simon Fraser University, Burnaby, Canada. jjlum@bccancer.bc.ca fhach@prostatecentre.com.
Julian J LumTrev & Joyce Deeley Research Centre, British Columbia Cancer Agency, Victoria, Canada. jjlum@bccancer.bc.ca fhach@prostatecentre.com.

Funding

Compressive genomics for large omics data sets: Algorithms applications & toolsR01GM108348 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BERGER, BONNIE · 2013 to 2019
$2.1M
NIGMS NIH HHS R01 GM108348
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Amino Acid SequenceCD8-Positive T-LymphocytesDNA Mutational AnalysisEpitopes, T-LymphocyteGenes, MHC Class IHLA-A2 AntigenHumansMaleOncogene Proteins, FusionProstatic NeoplasmsProtein BindingT-LymphocytesEpitopes, T-LymphocyteHLA-A*02:01 antigenHLA-A2 AntigenOncogene Proteins, FusionTMPRSS2-ETV4 fusion protein, human

Identifiers

PMID28954787
PMCPMC5831673

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.