Evidence map›Paper›PMID 28954002›Full record

ArticleMemorias do Instituto Oswaldo Cruz2017

Characterisation of complete high- and low-risk human papillomavirus genomes isolated from cervical specimens in southern Brazil.

Gisele R de Oliveira, Juliana D Siqueira, Fabiana Finger-Jardim, Valdimara C Vieira, Ronald L Silva, Carla V Gonçalves, Esmeralda A Soares, Ana Maria Barral de Martinez, Marcelo A Soares

Open access · diamondAbstract read
In one paragraph

Article in Memorias do Instituto Oswaldo Cruz, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Gisele R de OliveiraUniversidade Federal do Rio Grande, Escola de Medicina, Laboratório de Biologia Molecular, Rio Grande, RS, Brasil.
Juliana D SiqueiraInstituto Nacional de Câncer, Programa de Oncovirologia, Rio de Janeiro, RJ, Brasil.
Fabiana Finger-JardimUniversidade Federal do Rio Grande, Escola de Medicina, Laboratório de Biologia Molecular, Rio Grande, RS, Brasil.
Valdimara C VieiraInstituto Nacional de Câncer, Programa de Oncovirologia, Rio de Janeiro, RJ, Brasil.
Ronald L SilvaUniversidade Federal do Rio Grande, Escola de Medicina, Rio Grande, RS, Brasil.
Carla V GonçalvesUniversidade Federal do Rio Grande, Escola de Medicina, Centro de Obstetrícia e Ginecologia, Rio Grande, RS, Brasil.
Esmeralda A SoaresInstituto Nacional de Câncer, Programa de Oncovirologia, Rio de Janeiro, RJ, Brasil.
Ana Maria Barral de MartinezUniversidade Federal do Rio Grande, Escola de Medicina, Laboratório de Biologia Molecular, Rio Grande, RS, Brasil.
Marcelo A SoaresInstituto Nacional de Câncer, Programa de Oncovirologia, Rio de Janeiro, RJ, Brasil.
Universidade Federal do Rio Grande · BROncovir (United States) · USInstituto Nacional do Câncer · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The classification of human papillomavirus (HPV) intratypic lineages by complete genome sequencing is a determinant in understanding biological differences in association with this disease. In this work, we have characterised complete HPV genomes from southern Brazil. Fifteen cervicovaginal Pap smear negative samples previously categorised as HPV-positive were sequenced using ultradeep sequencing, and 18 complete genomes from 13 different HPV types were assembled. Phylogenetic and genetic distance analyses were performed to classify the HPV genomes into lineages and sublineages. This is the first report describing the distribution of HPV intratype lineages of high and low oncogenic risk in asymptomatic women from southern Brazil.

Indexed as

Genome, ViralAdultBrazilDNA, ViralFemaleHumansPapillomaviridaePapillomavirus InfectionsPhylogenyRisk FactorsUterine Cervical DiseasesVaginal SmearsDNA, Viral

Identifiers

PMID28954002
PMCPMC5607523
OpenAlexW2754827834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.