ArticlePloS one2017
Global gene expression in cotton (Gossypium hirsutum L.) leaves to waterlogging stress.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed, 63 citations in OpenAlex.
- Time-Series Elemental Imaging Reveals CAX-Dependent Redistribution Patterns for Anoxia Recovery.Journal of experimental botany · 2025Article
- Multiomic analyses reveal transcription factors involved in the fatty acid biosynthesis pathway under cold stress in upland cotton (Frontiers in plant science · 2025Article
- Mechanisms of flavonoids in quinoa's response to flooding stress in grain filling stage.Frontiers in plant science · 2025Article
- A review of soil waterlogging impacts, mechanisms, and adaptive strategies.Frontiers in plant science · 2025Review
- 6-BA Reduced Yield Loss under Waterlogging Stress by Regulating the Phenylpropanoid Pathway in Wheat.Plants (Basel, Switzerland) · 2024Article
- Morphological and proteomic study of waterlogging tolerance in cotton.Scientific reports · 2024Article
- Identification and characterization of waterlogging-responsive genes in the parental line of maize hybrid An'nong 876.Genetics and molecular biology · 2024Article
- Physiological, Epigenetic, and Transcriptome Analyses Provide Insights into the Responses of Wheat Seedling Leaves to Different Water Depths under Flooding Conditions.International journal of molecular sciences · 2023Article
- Deciphering the complex cotton genome for improving fiber traits and abiotic stress resilience in sustainable agriculture.Molecular biology reports · 2023Review
- Transcriptomic, Physiological, and Metabolomic Response of an Alpine Plant,International journal of molecular sciences · 2023Article
- Transcriptome Analysis Reveals Genes Associated with Flooding Tolerance in Mulberry Plants.Life (Basel, Switzerland) · 2023Article
- Transcriptomic and metabolomic analyses reveal the potential mechanism of waterlogging resistance in cotton (Frontiers in plant science · 2023Article
- Flooding Tolerance in Sweet Potato (Antioxidants (Basel, Switzerland) · 2022Article
- Ultrastructure, adaptability, and alleviation mechanisms of photosynthetic apparatus in plants under waterlogging: A review.Photosynthetica · 2022Article
- Leaf nutrient content and transcriptomic analyses of endive (Cichorium endivia) stressed by downpour-induced waterlog reveal a gene network regulating kestose and inulin contents.Horticulture research · 2021Article
- Physiological and Expressional Regulation on Photosynthesis, Starch and Sucrose Metabolism Response to Waterlogging Stress in Peanut.Frontiers in plant science · 2021Article
- Ethylene Differentially Modulates Hypoxia Responses and Tolerance acrossPlants (Basel, Switzerland) · 2020Article
- Article
- Review
- Genome-Wide Analysis of Gene Expression Provides New Insights into Waterlogging Responses in Barley (Plants (Basel, Switzerland) · 2020Article
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Authors and funding
12 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cotton is sensitive to waterlogging stress, which usually results in stunted growth and yield loss. To date, the molecular mechanisms underlying the responses to waterlogging in cotton remain elusive. Cotton was grown in a rain-shelter and subjected to 0 (control)-, 10-, 15- and 20-d waterlogging at flowering stage. The fourth-leaves on the main-stem from the top were sampled and immediately frozen in liquid nitrogen for physiological measurement. Global gene transcription in the leaves of 15-d waterlogged plants was analyzed by RNA-Seq. Seven hundred and ninety four genes were up-regulated and 1018 genes were down-regulated in waterlogged cotton leaves compared with non-waterlogged control. The differentially expressed genes were mainly related to photosynthesis, nitrogen metabolism, starch and sucrose metabolism, glycolysis and plant hormone signal transduction. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis indicated that most genes related to flavonoid biosynthesis, oxidative phosphorylation, amino acid metabolism and biosynthesis as well as circadian rhythm pathways were differently expressed. Waterlogging increased the expression of anaerobic fermentation related genes, such as alcohol dehydrogenase (ADH), but decreased the leaf chlorophyll concentration and photosynthesis by down-regulating the expression of photosynthesis related genes. Many genes related to plant hormones and transcription factors were differently expressed under waterlogging stress. Most of the ethylene related genes and ethylene-responsive factor-type transcription factors were up-regulated under water-logging stress, suggesting that ethylene may play key roles in the survival of cotton under waterlogging stress.
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