Evidence map›Paper›PMID 28953898›Full record

ArticlePloS one2017

iTRAQ protein profile analysis of developmental dynamics in soybean [Glycine max (L.) Merr.] leaves.

Jun Qin, Jianan Zhang, Fengmin Wang, Jinghua Wang, Zhi Zheng, Changcheng Yin, Hao Chen, Ainong Shi, Bo Zhang, Pengyin Chen and 1 more

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jun QinNational Soybean Improvement Center Shijiazhuang Sub-Center. North China Key Laboratory of Biology and Genetic Improvement of Soybean Ministry of Agriculture, Cereal & Oil Crop Institute, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, P.R. China.
Jianan ZhangNational Foxtail Millet Improvement Center, Minor Cereal Crops Laboratory of Hebei Province Institute of Millet Crops, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, P. R. China.
Fengmin WangNational Soybean Improvement Center Shijiazhuang Sub-Center. North China Key Laboratory of Biology and Genetic Improvement of Soybean Ministry of Agriculture, Cereal & Oil Crop Institute, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, P.R. China.
Jinghua WangNational Soybean Improvement Center Shijiazhuang Sub-Center. North China Key Laboratory of Biology and Genetic Improvement of Soybean Ministry of Agriculture, Cereal & Oil Crop Institute, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, P.R. China.
Zhi ZhengNational Foxtail Millet Improvement Center, Minor Cereal Crops Laboratory of Hebei Province Institute of Millet Crops, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, P. R. China.
Changcheng YinBeijing Protein Innovation, B-8, Beijing Airport Industrial Zone, Beijing, People's Republic of China.
Hao ChenBeijing Protein Innovation, B-8, Beijing Airport Industrial Zone, Beijing, People's Republic of China.
Ainong ShiDepartment of Crop, Soil and Environmental Sciences, University of Arkansas, Fayetteville, AR, United States of America.
Bo ZhangDepartment of Crop, Soil and Environmental Sciences, Virginia Tech, Blacksburg, VA, United States of America.
Pengyin ChenDepartment of Crop, Soil and Environmental Sciences, University of Arkansas, Fayetteville, AR, United States of America.
Mengchen ZhangNational Soybean Improvement Center Shijiazhuang Sub-Center. North China Key Laboratory of Biology and Genetic Improvement of Soybean Ministry of Agriculture, Cereal & Oil Crop Institute, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, P.R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Zao5241 is an elite soybean [Glycine max (L.) Merr.] line and backbone parent. In this study, we employed iTRAQ to analyze the proteomes and protein expression profiles of Zao5241 during leaf development. We identified 1,245 proteins in all experiments, of which only 45 had been previously annotated. Among overlapping proteins between three biological replicates, 598 proteins with 2 unique peptides identified were reliably quantified. The protein datasets were classified into 36 GO functional terms, and the photosynthesis term was most significantly enriched. A total of 113 proteins were defined as being differentially expressed during leaf development; 41 proteins were found to be differently expressed between two and four week old leaves, and 84 proteins were found to be differently expressed between two and six week old leaves, respectively. Cluster analysis of the data revealed dynamic proteomes. Proteins annotated as electron carrier activity were greatly enriched in the peak expression profiles, and photosynthesis proteins were negatively modulated along the whole time course. This dataset will serve as the foundation for a systems biology approach to understanding photosynthetic development.

Indexed as

Cluster AnalysisGene Expression Regulation, PlantGlycine maxPlant LeavesPlant ProteinsTandem Mass SpectrometryPlant Proteins

Identifiers

PMID28953898
PMCPMC5617144

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.