Evidence map›Paper›PMID 28952924›Full record

ArticleeLife2017

Unfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish.

Tokiro Ishikawa, Makoto Kashima, Atsushi J Nagano, Tomoko Ishikawa-Fujiwara, Yasuhiro Kamei, Takeshi Todo, Kazutoshi Mori

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
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  11. Evolutionary Aspects of the Unfolded Protein Response.Cold Spring Harbor perspectives in biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Tokiro IshikawaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0003-1718-6764
Makoto KashimaResearch Institute for Food and Agriculture, Ryukoku University, Otsu, Japan.
Atsushi J NaganoFaculty of Agriculture, Ryukoku University, Otsu, Japan.
Tomoko Ishikawa-FujiwaraGraduate School of Medicine, Osaka University, Suita, Japan.
Yasuhiro KameiSpectrography and Bioimaging Facility, National Institute for Basic Biology, Okazaki, Japan.
Takeshi TodoGraduate School of Medicine, Osaka University, Suita, Japan.
Kazutoshi MoriDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0001-7378-4019
Kyoto University · JPRyukoku University · JPThe University of Osaka · JPNational Institute for Basic Biology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When activated by the accumulation of unfolded proteins in the endoplasmic reticulum, metazoan IRE1, the most evolutionarily conserved unfolded protein response (UPR) transducer, initiates unconventional splicing of XBP1 mRNA. Unspliced and spliced mRNA are translated to produce pXBP1(U) and pXBP1(S), respectively. pXBP1(S) functions as a potent transcription factor, whereas pXBP1(U) targets pXBP1(S) to degradation. In addition, activated IRE1 transmits two signaling outputs independent of XBP1, namely activation of the JNK pathway, which is initiated by binding of the adaptor TRAF2 to phosphorylated IRE1, and regulated IRE1-dependent decay (RIDD) of various mRNAs in a relatively nonspecific manner. Here, we conducted comprehensive and systematic genetic analyses of the IRE1-XBP1 branch of the UPR using medaka fish and found that the defects observed in XBP1-knockout or IRE1-knockout medaka were fully rescued by constitutive expression of pXBP1(S). Thus, the JNK and RIDD pathways are not required for the normal growth and development of medaka. The unfolded protein response sensor/transducer IRE1-mediated splicing of XBP1 mRNA encoding its active downstream transcription factor to maintain the homeostasis of the endoplasmic reticulum is sufficient for growth and development of medaka fish.

Indexed as

RNA SplicingSignal TransductionUnfolded Protein ResponseAnimalsEndoribonucleasesGene Knockout TechniquesGenetic Complementation TestOryziasProtein Serine-Threonine KinasesX-Box Binding Protein 1EndoribonucleasesProtein Serine-Threonine KinasesX-Box Binding Protein 1cell biologycell deathendoplasmic reticulummolecular chaperonemRNA splicingOryzias latipesprotein folding

Identifiers

PMID28952924
PMCPMC5636610
OpenAlexW2756622318

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.