Evidence map›Paper›PMID 28952923›Full record

ArticleeLife2017

A Histidine pH sensor regulates activation of the Ras-specific guanine nucleotide exchange factor RasGRP1.

Yvonne Vercoulen, Yasushi Kondo, Jeffrey S Iwig, Axel B Janssen, Katharine A White, Mojtaba Amini, Diane L Barber, John Kuriyan, Jeroen P Roose

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. BORC assemblies integrate BLOC-1 subunits to diversify endosomal trafficking functions.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Evolution of pH-sensitive transcription termination inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. pH-regulated single cell migration.Pflugers Archiv : European journal of physiology · 2024
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Regulation of the Small GTPase Ras and Its Relevance to Human Disease.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yvonne Vercoulen *Department of Anatomy, University of California, San Francisco, San Francisco, United States.ORCID http://orcid.org/0000-0002-5060-2603
Yasushi Kondo *Department of Molecular and Cell Biology and Chemistry, University of California, Berkeley, United States.ORCID http://orcid.org/0000-0003-2131-575X
Jeffrey S Iwig *Department of Molecular and Cell Biology and Chemistry, University of California, Berkeley, United States.
Axel B JanssenDepartment of Anatomy, University of California, San Francisco, San Francisco, United States.ORCID http://orcid.org/0000-0002-9865-447X
Katharine A WhiteDepartment of Cell and Tissue Biology, University of California, San Francisco, San Francisco, United States.
Mojtaba AminiMolecular Cancer Research, Center for Molecular Medicine, UMC Utrecht, Utrecht University, Utrecht, Netherlands.
Diane L BarberDepartment of Cell and Tissue Biology, University of California, San Francisco, San Francisco, United States.ORCID http://orcid.org/0000-0001-7185-9435
John KuriyanDepartment of Molecular and Cell Biology and Chemistry, University of California, Berkeley, United States.ORCID https://orcid.org/0000-0002-4414-5477
Jeroen P RooseDepartment of Anatomy, University of California, San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0003-4746-2811
University of California, San Francisco · USQB3 · USUtrecht University · NL

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JEROEN ROOSE · 2011 to 2026
$31.1M
Roles for Intracellular pH Dynamics in CancerR01CA197855 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DIANE L BARBER · 2016 to 2026
$4.2M
Loss of Intrinsic Control in Autoimmune T Helper Cells with Signaling VariantsR01AI104789 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROOSE, JEROEN · 2014 to 2018
$1.9M
The pH-dependent adaptive advantage for recurrent histidine mutations in cancerF32CA177085 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WHITE, KATHARINE ALICE · 2013 to 2015
$153k
Differential regulation of Ras nucleotide exchange factorsF32GM095149 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI IWIG, JEFFREY SCOTT · 2010 to 2012
$146k
NCI NIH HHS F32 CA177085NCI NIH HHS R01 CA197855NIAID NIH HHS P01 AI091580NIAID NIH HHS R01 AI104789NIGMS NIH HHS F32 GM095149
6 · The paper itself

Abstract

RasGRPs are guanine nucleotide exchange factors that are specific for Ras or Rap, and are important regulators of cellular signaling. Aberrant expression or mutation of RasGRPs results in disease. An analysis of RasGRP1 SNP variants led to the conclusion that the charge of His 212 in RasGRP1 alters signaling activity and plasma membrane recruitment, indicating that His 212 is a pH sensor that alters the balance between the inactive and active forms of RasGRP1. To understand the structural basis for this effect we compared the structure of autoinhibited RasGRP1, determined previously, to those of active RasGRP4:H-Ras and RasGRP2:Rap1b complexes. The transition from the autoinhibited to the active form of RasGRP1 involves the rearrangement of an inter-domain linker that displaces inhibitory inter-domain interactions. His 212 is located at the fulcrum of these conformational changes, and structural features in its vicinity are consistent with its function as a pH-dependent switch.

Indexed as

Gene Expression RegulationHydrogen-Ion ConcentrationCell LineCrystallography, X-RayDNA-Binding ProteinsGuanine Nucleotide Exchange FactorsHistidineHumansModels, BiologicalModels, MolecularMutant ProteinsProtein ConformationDNA-Binding ProteinsGuanine Nucleotide Exchange FactorsHistidineMutant ProteinsRASGRP1 protein, humanbiochemistrybiophysicsLymphocytesnoneRasGEFsRasGRPSignalingsmall GTPasesstructural biologyStructure

Identifiers

PMID28952923
PMCPMC5643099
OpenAlexW2758880702

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.