Evidence map›Paper›PMID 28951974›Full record

ArticleChromosoma2018

New high copy tandem repeat in the content of the chicken W chromosome.

Aleksey S Komissarov, Svetlana A Galkina, Elena I Koshel, Maria M Kulak, Aleksander G Dyomin, Stephen J O'Brien, Elena R Gaginskaya, Alsu F Saifitdinova

Abstract read
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In one paragraph

Article in Chromosoma, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Aleksey S KomissarovTheodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, Sredniy av. 41, 199034, Saint Petersburg, Russia.
Svetlana A GalkinaDepartment of Genetics and Biotechnology, Saint Petersburg State University, Universitetskaya emb. 7/9, 199034, Saint Petersburg, Russia.
Elena I KoshelDepartment of Cytology and Histology, Saint Petersburg State University, Universitetskaya emb. 7/9, 199034, Saint Petersburg, Russia.
Maria M KulakDepartment of Cytology and Histology, Saint Petersburg State University, Universitetskaya emb. 7/9, 199034, Saint Petersburg, Russia.
Aleksander G DyominSaint Petersburg Association of Scientists and Scholars, Universitetskaya emb. 5, Saint Petersburg, 199034, Russia.
Stephen J O'BrienTheodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, Sredniy av. 41, 199034, Saint Petersburg, Russia.
Elena R GaginskayaDepartment of Cytology and Histology, Saint Petersburg State University, Universitetskaya emb. 7/9, 199034, Saint Petersburg, Russia.
Alsu F SaifitdinovaChromas Research Resource Center, Saint Petersburg State University, Oranienbaumskoye sh. 2, 198504, Saint Petersburg, Russia. saifitdinova@mail.ru.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The content of repetitive DNA in avian genomes is considerably less than in other investigated vertebrates. The first descriptions of tandem repeats were based on the results of routine biochemical and molecular biological experiments. Both satellite DNA and interspersed repetitive elements were annotated using library-based approach and de novo repeat identification in assembled genome. The development of deep-sequencing methods provides datasets of high quality without preassembly allowing one to annotate repetitive elements from unassembled part of genomes. In this work, we search the chicken assembly and annotate high copy number tandem repeats from unassembled short raw reads. Tandem repeat (GGAAA)

Indexed as

ChromosomesGene DosageTandem Repeat SequencesAnimalsChickensFemaleGenomeGenomicsIn Situ Hybridization, FluorescenceMaleSex FactorsGallus gallus DomesticusKmer analysisLampbrush chromosomesRaw reads analysisSatellite DNATandem repeats

Identifiers

PMID28951974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.