Evidence map›Paper›PMID 28951553›Full record

ArticleScientific reports2017

Discovery of a Low Toxicity O-GlcNAc Transferase (OGT) Inhibitor by Structure-based Virtual Screening of Natural Products.

Yubo Liu, Yang Ren, Yu Cao, Huang Huang, Qiong Wu, Wenli Li, Sijin Wu, Jianing Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
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  8. Review
  9. Review
  10. O-GlcNAc modulation of nuclear pore complexes orchestrates mRNA export efficiency.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
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  14. O-GlcNAcylation: Crosstalk between Hemostasis, Inflammation, and Cancer.International journal of molecular sciences · 2024
    Review
  15. Article
  16. Article
  17. Article
  18. Targeting ProteinCells · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yubo LiuSchool of Life Science & Medicine, Dalian University of Technology, Panjin, China.
Yang RenSchool of Life Science & Medicine, Dalian University of Technology, Panjin, China.
Yu CaoSchool of Life Science & Medicine, Dalian University of Technology, Panjin, China.
Huang HuangSchool of Life Science & Medicine, Dalian University of Technology, Panjin, China.
Qiong WuSchool of Life Science & Medicine, Dalian University of Technology, Panjin, China.
Wenli LiSchool of Life Science & Medicine, Dalian University of Technology, Panjin, China.
Sijin WuSchool of Life Science & Biotechnology, Dalian University of Technology, Dalian, China.
Jianing ZhangSchool of Life Science & Medicine, Dalian University of Technology, Panjin, China. jnzhang@dlut.edu.cn.
Dalian University · CNDalian University of Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

O-GlcNAc transferase (OGT) plays an important role in regulating numerous cellular processes through reversible post-translational modification of nuclear and cytoplasmic proteins. However, the function of O-GlcNAcylation is still not well understood. Cell permeable OGT inhibitors are needed to manipulate O-GlcNAcylation levels and clarify the regulatory mechanism of this modification. Here, we report a specific natural-product OGT inhibitor (L01), which was identified from a structure-based virtual screening analysis. L01 inhibited O-GlcNAcylation both in vitro and in cells without significantly altering cell surface glycans. Molecular dynamics and site-directed mutagenesis indicated a new binding mechanism in which L01 could interact with Asn557 near the UDP binding pocket of OGT. This residue may contribute to the specificity of L01. Furthermore, as a specific OGT inhibitor, L01 produced low toxicity in cellular and zebrafish models. The identification of L01 validates structure-based virtual screening approaches for the discovery of OGT inhibitors. L01 can also serve as a chemical tool to further characterize O-GlcNAcylation functions or a new molecular core for structure-activity relationship studies to optimize the biochemical potencies.

Indexed as

Drug DiscoveryAnimalsBinding SitesBiological ProductsCell NucleusChlorocebus aethiopsCOS CellsHealthy VolunteersHeLa CellsHumansK562 CellsLeukocytes, MononuclearModels, AnimalMolecular Dynamics SimulationMutagenesis, Site-DirectedN-AcetylglucosaminyltransferasesBiological ProductsN-AcetylglucosaminyltransferasesOGT protein, humanRecombinant Proteins

Identifiers

PMID28951553
PMCPMC5615061
OpenAlexW2755033559

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.